Veme007397.1
Basic Information
- Insect
- Vollenhovia emeryi
- Gene Symbol
- -
- Assembly
- GCA_000949405.1
- Location
- NW:201404-243484[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 22 0.00015 0.012 15.7 3.1 1 23 291 313 291 313 0.96 2 22 3.2e-05 0.0025 17.8 1.5 1 23 319 341 319 341 0.98 3 22 0.092 7.1 6.9 2.0 1 23 348 371 348 371 0.94 4 22 1.4e-06 0.00011 22.1 1.3 1 23 377 399 377 399 0.98 5 22 0.15 11 6.3 3.9 2 20 405 423 404 427 0.82 6 22 0.00011 0.0087 16.1 1.3 1 23 434 456 434 456 0.95 7 22 1.3e-06 0.0001 22.1 1.2 1 23 460 482 460 482 0.99 8 22 0.039 3 8.1 1.1 1 23 488 510 488 510 0.94 9 22 1.4e-05 0.0011 19.0 0.6 1 23 516 538 516 538 0.98 10 22 0.0002 0.015 15.3 1.8 1 23 845 867 845 867 0.98 11 22 0.0088 0.68 10.1 1.8 1 23 905 928 905 928 0.98 12 22 0.00024 0.019 15.0 2.8 2 23 938 959 937 959 0.96 13 22 0.0056 0.43 10.7 1.4 3 23 969 989 967 989 0.95 14 22 0.13 9.6 6.5 6.7 3 23 1073 1093 1072 1093 0.97 15 22 0.00032 0.024 14.7 1.4 1 23 1102 1125 1102 1125 0.97 16 22 0.1 8 6.8 2.1 1 23 1140 1163 1140 1163 0.95 17 22 2.4e-06 0.00019 21.3 1.2 1 23 1169 1192 1169 1192 0.96 18 22 0.078 6 7.1 0.5 3 23 1199 1220 1197 1220 0.93 19 22 0.00026 0.02 14.9 0.5 1 23 1225 1248 1225 1248 0.97 20 22 3.5e-08 2.7e-06 27.1 0.4 2 23 1255 1276 1254 1276 0.97 21 22 1.2e-06 9e-05 22.3 1.0 1 23 1282 1304 1282 1304 0.98 22 22 7.4e-07 5.7e-05 23.0 0.1 1 23 1310 1332 1310 1332 0.98
Sequence Information
- Coding Sequence
- ATGAAACCGGAGCAGAGCAACGAGAACAGGTTAGACGGTACTGTGATGCAGCAAGTGAGCGAACATCAGAACAATATGAACATGGGCATGATGGACAACATGGGCCTAAGTATGCCCATGATGATGTCGAGTAACGCCCAGCAACAAATAACCTCAGTTCCTATGGACAGCAGTGGTAGCTCTGTACAAAATGTCCAACCAGTGGCCGGACCAAGCACGCAAGCGGCACACGACCAAATTGCACAGAATCAAACGGACGCGCCTACGCAAcaggaggacgaggacgagagtagcgaagaggaggagaactCGGACGACGAGTGCGACGGAGACGAAGGCCTACCTATAAAGGAAGAGAGTGAGGAAGATCCTAATAACAGTAGAACTATAGAGCCTACGACGTTTGTTAATGTTTCCCTGGCGTGCGACGAAGCCGGCCCCTCTGGTCTCCAGCAACAGAAAATTGCCGACATGCCCGAGATGGTGATGCCACAGGCAGCGGACGTGGATCCGAAAACTGGgtGCAATCAACTTGATCCACTCTCGCCAACTTTTCTGATAGTAAAACTGGAAGACGATTATTTTCGCATCCCAAAATCATTGAGCGTGTTTATGATGAAGGAACCGCCCCCCGAGGAAAATAATTCCAAAACTGAGTCGAAGGAAGATGAAGAAGCGAAAGAGAAGAATAGCCGCGTTGAGAAGGCTCAAAATCGCGTCGAGACCAGGAAGAGAAATAGAACCGTCATCGACGATCTGGACGACTGGGACGATCTGGATGACACACCATTGGATTTCAGGAAACGGCGCAAAGACGAGCTCTCAAAAGTGCGATCCAGCAAACACACGACTATTCCAAAGAAGAAGTCGCATATCTGCGAGATCTGTTACATCACGTTCGATCGCAAGAGCAAGCTCACTAGTCACATGTTTAAGCACAGCAACTCACGGCCGCACAAGTGTACGATCTGCTCCAAGGGCTTCAAGACCGGTGCGTATCTTTCTAGGCATATGGAGATCCACGACGAGCCCGCGCAGCTACACGCGTGCACCCTGTGCGATTTTAAGGCGCGCACGAAGCCGTATCTGAAGATACATTACATTCGCAAGCACACCGAGGACTACAACTATAGCTGCGAGCAATGTGGCAAGATGTTTAAAGTTCAGTCTGACTACACGACACACATGAAGGACCACGACACGGAGTCTTGCGTTTGCGACATATGCGGCACGTCCTATCCCAGCAAGAGTTCTCTGTACTTCCATAAGCATTACAAACACAAAACGAAAATCAAGGAGTTCGAGTGTCAGGTGTGCAGAAAGCGCTTCAAGACTCAGAAGAATCTCGACAGTCACGCTGAGCTGCACAAGATGAAGTACGTTTGTGAGCAATGCGGTATGGAGTTCAAATTCAAGTACGGCCTCACAAAGCATCTCAGGACCCACTCGGGCGAGAAGTCATATCTCTGCGCGATATGCGGCAAGACCTTTGGCTGCCTCAGCTCGCAAAAGATTCATCTGCTTACCCACGTCGGCGAGCGACCATACGTCTGCGACATCTGCGGTCAAAGCTTCACCCAGCGGTCGCCGATGATGCTGCACCGGAAGAAGCATCCCGGCGTCcatccaccgccgccgcccaTAAAAATTACCAATCTCCTGCACGGCGTGCAAGATAAAATTGTTGTGAACAAAAGTGCCAAgaagTCTGTGCCACGTGATCCtcttaaacaaaattttcctGTGATTCAAAGCAAGCATCAATTTTATCTTATGCCGATGCAAGGTTCTTATGAGTTTATcgatgaagataaaaataggATTGTGGATATACCACATCTTTTGGACGTAAAAGTGGAGATTGTTGACGAGTCCGTGGAGGAGCCTGAAGAAATAAACAAACGTGagatTTTAGAGATTAGAGATAAGAAAATGGATTGTAGAATATTCACCGATCTAGTAAAATTGTCAAGAAATGTGATAAAGAAAAACACAATGGAAGATAATAACAAATTGCTGGGTGAAGTTATCTTCAACGACAAATTTTCTTCTATCAACGAGACATACACAATAGAAGATGTGTTTTACAAGAAACTTGCTAACGGAGATTTACACATGCGATATCTGTCAGATAGTATTCGAGTAAGAAACAAGAACTTCAAGTATCAATGCAAAGTTGAAGTTACACCGACTTATCCATCAGGAGATGAATGCCAATTCGTACAAGAACAAAACTGCAGCAAGAAGATCTTGCAGACGGACGCTTCCGGTTGCTTTATTGTCGGAAAAGATTCGATACCAATGAGACTGTGGCAACACGCTGATGCCGGCGGTAAACTGCGCTATTCGTTAATACCGATATTAGACGACGTTAAGGCTGAGGAAGTAAAGGTAGTACCTAATGTACTACCGTTGACCTCTATTAAAGCCGAAAAGACGGAGGCTCGTCGGAGCAATCGGAGAATCAGTGGAAGCAACGTCGGTAGTTGCAGGGATTTCTCGATGCGTTTGGGCAATCAAGTCATTGATAGTTACACTTGCAACAGGTGCAATATGAAATTTCCCATGCAGTCTATGCTGAATCGCCACAAAGTGACGCACGATATGCGTTTGTGGCTCCGCAGAAAGTGTCTGAGAGAAAAATACACGCGATATTTAAAGATAAACACTCGAAGGCAGCTGAAGATGCAGAAACGTTTGCAGCAAACAAAGTACGTTTGTACACTTTGCGATTTCAACTGTAATAGATTGGCGACTTTGGATGCGCATCTAAAGAGGAAGCACCTGGCCAAGACAAATCCGAAGAAGCTCAGTTGTACGATCTGCAGTTACGAGTGTTCGAGTAAAGTGAATCTTAGCAGGCACATGAGCAAGCACAGGAACAAGAATACGACGAGTCTTGCTTGCAACATGTGCGATTTTGAATGCAAACGGAGCACTACTCTGGCGTCTCACTTGGAGAGCCATAAGAGATCTAAGAAAACTTCGGACGCGAGTTGTGCGAAACGTACAATAATGAAGTGTAGCTATACATCTCCCAAGAAGACGAGTCAATCGGATTGCTCGCACAGCCGCGGGACTGCGTTAATCTCATACCAGGATTCTaacttgataattaaaaaggaAGTTTATGCCGAGGATCGCAGCGAGACGTCGGCGATCGCTGCCGACGCCCCGAAGAAATCCAGCCAGAAAAGGCCACTCGTCGAGGAGCACTGTGATCTCTGCGATTTTACGTGCGCGAAAAAGAGTACGTTGTACTCGCATAAACGTCGACACAAGGTGGAGGACGTCAACGAGGTGTACGCGTGCAACGAGTGCGGCTTCAAGACTGCCAAGAAGTCGTCGCTGTACTCTCACATCAAGCGGAAGCACAAAGAACCGCGGTCTAGCGACGGCGACGCACAACCGGAACTGTTCTACTGCAGCCAGTGTGACTTTAAGAATAAGAACAAATACGAGTTGAAGATACACGTCGCTCGCAAGCACACGGACGACTTCAAGTTCTCTTGCGAGACATGCGGTAAAAAGTTCAAGGTCAAGGGCGACCTAACGAATCATATACGCTTCAGCCATCGGGAGCAGCCGGTGATCTGTGACGTTTGCGGCAAGATTTGTCTCAACAGCAACTCCTTGTATGTGCATCAGAAGTTCGCCCACTACAAGGCCAAGTACGAGTGTCAAATATGCAAGAGGCGTATGGTCAGCCAGGAGAATCTCAACGAGCATATGCTTAGACAGCACGAGCGCAAGGAGAACGTGGTGTGCGAGGAGTGTGGCAAGACTTTCTCGCGGAACAGCAGATTGAAGGTGCACATGAGGATCCATACTGGCGACAAACCATACAGCTGCACCATCTGCAAGAAGTCCTTCGCCCGCAGGACAGCTCTCAAGCAGCACCTGCTCATCCATACCGGCATTAGGCCGTACGTGTGCGATATTTGCGGCAAGGCCTTCACTCAAAAGCCGGGTCTGATCAGCCACAGGAAATCGCATCCGGGTTCCCATCCACCTCTGCCACGCGTCCTCATCGACCACATCCTGAACGATTTTATGAACGGCTGA
- Protein Sequence
- MKPEQSNENRLDGTVMQQVSEHQNNMNMGMMDNMGLSMPMMMSSNAQQQITSVPMDSSGSSVQNVQPVAGPSTQAAHDQIAQNQTDAPTQQEDEDESSEEEENSDDECDGDEGLPIKEESEEDPNNSRTIEPTTFVNVSLACDEAGPSGLQQQKIADMPEMVMPQAADVDPKTGCNQLDPLSPTFLIVKLEDDYFRIPKSLSVFMMKEPPPEENNSKTESKEDEEAKEKNSRVEKAQNRVETRKRNRTVIDDLDDWDDLDDTPLDFRKRRKDELSKVRSSKHTTIPKKKSHICEICYITFDRKSKLTSHMFKHSNSRPHKCTICSKGFKTGAYLSRHMEIHDEPAQLHACTLCDFKARTKPYLKIHYIRKHTEDYNYSCEQCGKMFKVQSDYTTHMKDHDTESCVCDICGTSYPSKSSLYFHKHYKHKTKIKEFECQVCRKRFKTQKNLDSHAELHKMKYVCEQCGMEFKFKYGLTKHLRTHSGEKSYLCAICGKTFGCLSSQKIHLLTHVGERPYVCDICGQSFTQRSPMMLHRKKHPGVHPPPPPIKITNLLHGVQDKIVVNKSAKKSVPRDPLKQNFPVIQSKHQFYLMPMQGSYEFIDEDKNRIVDIPHLLDVKVEIVDESVEEPEEINKREILEIRDKKMDCRIFTDLVKLSRNVIKKNTMEDNNKLLGEVIFNDKFSSINETYTIEDVFYKKLANGDLHMRYLSDSIRVRNKNFKYQCKVEVTPTYPSGDECQFVQEQNCSKKILQTDASGCFIVGKDSIPMRLWQHADAGGKLRYSLIPILDDVKAEEVKVVPNVLPLTSIKAEKTEARRSNRRISGSNVGSCRDFSMRLGNQVIDSYTCNRCNMKFPMQSMLNRHKVTHDMRLWLRRKCLREKYTRYLKINTRRQLKMQKRLQQTKYVCTLCDFNCNRLATLDAHLKRKHLAKTNPKKLSCTICSYECSSKVNLSRHMSKHRNKNTTSLACNMCDFECKRSTTLASHLESHKRSKKTSDASCAKRTIMKCSYTSPKKTSQSDCSHSRGTALISYQDSNLIIKKEVYAEDRSETSAIAADAPKKSSQKRPLVEEHCDLCDFTCAKKSTLYSHKRRHKVEDVNEVYACNECGFKTAKKSSLYSHIKRKHKEPRSSDGDAQPELFYCSQCDFKNKNKYELKIHVARKHTDDFKFSCETCGKKFKVKGDLTNHIRFSHREQPVICDVCGKICLNSNSLYVHQKFAHYKAKYECQICKRRMVSQENLNEHMLRQHERKENVVCEECGKTFSRNSRLKVHMRIHTGDKPYSCTICKKSFARRTALKQHLLIHTGIRPYVCDICGKAFTQKPGLISHRKSHPGSHPPLPRVLIDHILNDFMNG
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -