Veme009834.1
Basic Information
- Insect
- Vollenhovia emeryi
- Gene Symbol
- -
- Assembly
- GCA_000949405.1
- Location
- NW:454664-460118[+]
Transcription Factor Domain
- TF Family
- zf-BED
- Domain
- zf-BED domain
- PFAM
- PF02892
- TF Group
- Zinc-Coordinating Group
- Description
- The BED finger, which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain [3].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 7 0.00014 0.081 12.6 0.8 5 43 11 46 9 47 0.89 2 7 4.2e-06 0.0024 17.5 4.5 16 44 70 99 62 99 0.92 3 7 1.4e-06 0.00076 19.0 0.3 15 43 122 153 111 154 0.83 4 7 0.0018 1 9.0 0.5 14 42 181 212 171 213 0.87 5 7 4e-05 0.022 14.3 0.5 14 38 242 266 232 272 0.88 6 7 2e-07 0.00011 21.7 0.2 1 42 290 332 290 333 0.96 7 7 6.5e-06 0.0036 16.9 0.1 1 40 349 389 349 394 0.89
Sequence Information
- Coding Sequence
- ATGACGGAAATTGAAAAGTGGATGCGGAAACATTACACACAAGAAAATCCTGACACAATAAGGTGTAATCGTTGTAAAGAAGTTTTTTCTAATCATGATAGActgcaaatattaaaatatcactTATACGATGAACATGAAATAACAGAATTAGACGAATATCCAAGGCGTTACAACATAAAGGAAAATTACGAAATAACGTGTTTAACGGCAACATGCAAGCATTGtatgaagaaaattaattttgcaattcaTGGCgtgcatattttaatgactcatttaaaaattattcacccggataaatataaacatttaaGCAAAGGAAAAAGATCACTTCTATGGGACAAGTTTGATGAAAGAGGCGATTATGCAACTTGCAAAGAATGTAAGAAAAAGCTAGCATTAAATGGTAAAAGTCCTACGACAAATTTACAACAGCACTTATCACGTTGCCGCCACTTAAATCTTGATCACCTAAATAAAGATGAGTTGACGAAAATACGAAGGAGGTCACTTGTATGGGACAAGTACGATGTAATGGGCAACAAGGCGACATGCAAGAGATGTACAAAAAAAGTATTCATACGTAATCTTAAAAATCCTCTACCGAATTTAAGATACCACTTATATCACTGCTAcTACTTAAATCTTGATCAGGCAAGTAAAGATGAGCTGAAGAAAATACGAAGGAGATCACGTATATGGGACAAGTACGATGTAATGGACAACAAGGCGGCGTGCAAAgaatgtaagaaaatattaaaaataaatggtaAAACGGATAGTTTAAAGAACCACTTTCTTTATTGCCGTCGCTTAAATCTTGGTCACATAAGTAAAGCTGagttgaaaaagaaacgaagaagatcACAAGTATGGGAGAACTTCGATGATGTAGAAGGAAATATGGAAATAGTAATATGCAAACACTGTAAAAGAGAAGTAAAATTAGGTCTATCTGCATCGTCACGTTTAGCTGGACACTTACGGCATTGTCGTCGCATAAATCTTGATGAAGATGAGTtgagaaagagacgaagaagaTCACAAGTATGGGAAAAGTTCGATGATGAAGAGGGAAACATGGAAATAGCAATATGCAAACAATGTAAAAAAGCAGTAAAATTAGGTCCATCTGCAACGTCACGTTTAACTGCACACTTACAGTATTGTCGAAGCAAAAAAGAAGATATGAAGAATATCGCACCTACAGAACAAGTACAATGTGATCGGCAAGACGACATGCAAGGGATGTAA
- Protein Sequence
- MTEIEKWMRKHYTQENPDTIRCNRCKEVFSNHDRLQILKYHLYDEHEITELDEYPRRYNIKENYEITCLTATCKHCMKKINFAIHGVHILMTHLKIIHPDKYKHLSKGKRSLLWDKFDERGDYATCKECKKKLALNGKSPTTNLQQHLSRCRHLNLDHLNKDELTKIRRRSLVWDKYDVMGNKATCKRCTKKVFIRNLKNPLPNLRYHLYHCYYLNLDQASKDELKKIRRRSRIWDKYDVMDNKAACKECKKILKINGKTDSLKNHFLYCRRLNLGHISKAELKKKRRRSQVWENFDDVEGNMEIVICKHCKREVKLGLSASSRLAGHLRHCRRINLDEDELRKRRRRSQVWEKFDDEEGNMEIAICKQCKKAVKLGPSATSRLTAHLQYCRSKKEDMKNIAPTEQVQCDRQDDMQGM
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -