Veme012652.1
Basic Information
- Insect
- Vollenhovia emeryi
- Gene Symbol
- lov
- Assembly
- GCA_000949405.1
- Location
- NW:160576-166987[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 6.9 5.1e+03 -3.1 0.1 10 23 246 259 245 260 0.73 2 2 1.2e-15 8.9e-13 47.3 0.0 1 44 543 586 543 587 0.95
Sequence Information
- Coding Sequence
- ATGTCGAGCGTCTGCAACAGTCCTAGCAGAATGGCTCTGCAGTCGCATTATTCTTTACGATGGCACAATCATCTCAACCACATACAACGGGCGTTCGAGGAGTTGTTGCACGCGGAGACGCTCGTCGACGTGACCCTCATCTGCGCCGACAGCAGCGTCAAGGCACACAAGGTCGTCCTTAGCGCCTGCAGTCCTTTCTTCGAGAGGATATTCGCGGAAAATCCATGCAAGCATCCCGTGATCGTGCTGAAGGACTTCTCGCATCACGAGCTCTCCACTTTGGTGCACTTTATATATCGCGGCGAGGTGCAGATCGCCCAGGAGGAGTTACCGGGACTGATGAAGGCCGCGGAGTGTCTGCAGGTGCGCGGACTGTCATCGTCGGAGCCGAGGCCGGTGTCGACAGAACCCAGGCCGTCGTCGTTGGCATCGACGCCGACGCGCGATCTCATTCTGGCCGAGCTACCGACGCCGGAAGTCGCGCGACACGGCACGTCCGAGGAGGACGAGAACGCGCTGGAGAGCACGAGGGAGATGAAACCCATCCTGTTTCAACCAACGAGGGACCATCCGGCCAAGCCGCTCATTGGCCACATGAACTTTGGTATCCGCGAGAGTTGCGGCTCGCCGTCGATGCCCCGCCGGAAGCAGGCGCGGCCGCGCCGACGGTCTGGCGAGATGCTGCCGCAAGATCTGAGCAGACGCTTGACCCCACCGATCAGCTCGAGTCCGTTGGCCAGCGTTCTTAATCTCAGCGGTAGTCAGCACCAGGCGCAGCAACAGCAGTTAATGCTGCAGCAATCCCAGTACCATCAGCAGCAGGCGATTAACAACGCACAAAaccaacaacagcagcagcagcaacaacaacagcagGAGGACATGGCGGAGAACCTCTCGATGAAGAAACCTCTTTCGCCGAGCGGACTGGATCAGCATCACGTGAAGACGGAGGGCAGCGAAGCGACGAGTAGTCCACGCGGTTCGCCCCTCACGGGGACGAGTTTGTTGCATCATCCGGACGGCCCTGTACCGGACATCCCGGCGGCCGTGGCGGCGGCCGTGGCGACCGTAGCGTTGTCGCTACCAACGATGCCCACGTTGTCACTGTCGCAATCGCATCCCCCCGAGTACCTGACAAGCCTCGGCCAGTTGACGAGCCAATGGCTGCCCGGGCATCCGCAGAGTCAACTGCCGCCGCCCCCGTCGGCCCAAAGTCACCATCCACGCGAGGACAGTCCGCACGGCTCCGGTAGATCTCATCCgtatcagcagcagcagccacAAGAATCTGCACTGCCACGGCGTAGCACGATGGCGATGTTCACGCCAACGTTGGACGGCGTGACGGCTCTAGGTGGTGGACTTTTTTCGCACCACGCCACTACGTACGACCGAGGTAACCTCCTCGCGGATTCGCTCCTCACGGATAATTTCAAGCCAGAGGCGCTGCAAAATCTCTTCGGTACTCCCAGTCTCGGCCCTCCGCCCGCGAAAAAGACCAAGAAGCATCGAAGTGATAGTGACGCGCCACGCAGATGGAACGATCACAATACTCGTGCACTCGCGGTCAATAGGCCGAAGGGGCAACACAGCGCGCCGCGAGGAGGACCACCGAGGTCATGGACGAATAACGAACTCACGCTTGCTTTGCAACACGTTTGGGAAAAAAAGCTGACGACGTCGCAAGCCAGTCGTATGTTTGGTATTCCCTACAACAGTTTGTTGATGTACGTACGTGGTAAATACGGTAAGAGTCTGAAGCTCGAGCAATTACGTAGGAACTGCACCGGCGCCAGCACCCCCGAAATCATGAATAACAATAACATCAAGCCCGTCCAGCAGTCCGCGCAGATGAGCCACGGGCTCGCCGGATTGCCGCTGCAGCATCCGGGGGACAACGGCGGATACCCCCATCGCGGTCTACTTGGCAGTAACATGCCGCAGCCGCAGAGCTTCTATCCGGCCGAATACGCTGCCGCATCTTACCCTCTGGCAGTGAATATGGTGCATATGTTACCCCCGAGCGAGCAGAAGGCGTTCGAATCGTCCGCGAACCCGGacgggggcgggggcgggtgCGTAGCAAGTGGGGGAGGGGACGGAAGCGGCAGCAGTGGCGGTGGTGGCGATTTGACGAACTCGCAGACCAGCGAGACACCGTCCCCCATTGTTGACCACCACCATCATCAGGAGTCGTCGATGCAGCCGCAACCAACGCAATCGGCGCCCGCGTTGCTACAGCAGAACGGTTCCGATTAG
- Protein Sequence
- MSSVCNSPSRMALQSHYSLRWHNHLNHIQRAFEELLHAETLVDVTLICADSSVKAHKVVLSACSPFFERIFAENPCKHPVIVLKDFSHHELSTLVHFIYRGEVQIAQEELPGLMKAAECLQVRGLSSSEPRPVSTEPRPSSLASTPTRDLILAELPTPEVARHGTSEEDENALESTREMKPILFQPTRDHPAKPLIGHMNFGIRESCGSPSMPRRKQARPRRRSGEMLPQDLSRRLTPPISSSPLASVLNLSGSQHQAQQQQLMLQQSQYHQQQAINNAQNQQQQQQQQQQQEDMAENLSMKKPLSPSGLDQHHVKTEGSEATSSPRGSPLTGTSLLHHPDGPVPDIPAAVAAAVATVALSLPTMPTLSLSQSHPPEYLTSLGQLTSQWLPGHPQSQLPPPPSAQSHHPREDSPHGSGRSHPYQQQQPQESALPRRSTMAMFTPTLDGVTALGGGLFSHHATTYDRGNLLADSLLTDNFKPEALQNLFGTPSLGPPPAKKTKKHRSDSDAPRRWNDHNTRALAVNRPKGQHSAPRGGPPRSWTNNELTLALQHVWEKKLTTSQASRMFGIPYNSLLMYVRGKYGKSLKLEQLRRNCTGASTPEIMNNNNIKPVQQSAQMSHGLAGLPLQHPGDNGGYPHRGLLGSNMPQPQSFYPAEYAAASYPLAVNMVHMLPPSEQKAFESSANPDGGGGGCVASGGGDGSGSSGGGGDLTNSQTSETPSPIVDHHHHQESSMQPQPTQSAPALLQQNGSD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01477024;
- 90% Identity
- iTF_00765461;
- 80% Identity
- iTF_01520395;