Vcin026069.1
Basic Information
- Insect
- Villa cingulata
- Gene Symbol
- stc
- Assembly
- GCA_951394055.1
- Location
- OX596022.1:2132536-2136715[-]
Transcription Factor Domain
- TF Family
- zf-NF-X1
- Domain
- zf-NF-X1 domain
- PFAM
- PF01422
- TF Group
- Zinc-Coordinating Group
- Description
- This domain is presumed to be a zinc binding domain. The following pattern describes the zinc finger. C-X(1-6)-H-X-C-X3-C(H/C)-X(3-4)-(H/C)-X(1-10)-C Where X can be any amino acid, and numbers in brackets indicate the number of residues. Two position can be either his or cys. This family includes Swiss:P40798, Swiss:Q12986 and Swiss:P53971. The zinc fingers in Swiss:Q12986 bind to DNA [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 2 4.3e+04 -4.3 1.6 15 19 550 554 549 554 0.81 2 11 0.0044 95 4.4 19.9 3 19 596 612 585 612 0.85 3 11 2.4e-07 0.0052 18.0 13.8 1 18 648 665 642 666 0.85 4 11 2 4.3e+04 -4.2 2.1 8 13 671 676 670 677 0.79 5 11 4.4e-08 0.00095 20.3 11.7 1 19 706 724 706 724 0.94 6 11 1.9e-05 0.41 11.9 14.0 4 18 772 786 765 787 0.88 7 11 0.008 1.7e+02 3.6 9.3 1 11 827 837 827 838 0.96 8 11 5.6e-10 1.2e-05 26.4 15.5 1 18 854 871 854 872 0.97 9 11 2 4.3e+04 -11.8 14.5 10 18 919 928 905 929 0.65 10 11 3.6e-08 0.00078 20.6 9.9 1 17 965 981 965 981 0.96 11 11 4e-07 0.0086 17.3 14.8 1 19 998 1017 998 1017 0.96
Sequence Information
- Coding Sequence
- atgaatacgaATAGAAACAGTTATGATGATGGTAGCAGTAACACAACGACAAAGACAACAAAAAATCCTTCATCAGAAAATCCTAGTAATATTATTGGCAATGATAACAACAGTAACAGAAACAATTATGTGGACTTTAATCAATTCATTCGTCTTCATAATTTTGCAACTCCAACATATGGTAATGATGGTGGTAACGGTGGTATCGCCGCCGCCGGCATGATTAACAATGCTGGTGGTATtgttggtggtggtggtggtggtggtgttgcTGGTGGTGTTATcgatgatatttttaattttcatcaacaacaacaacaacaacaaatatcaccatcatcaacattaaacaatttttatggACTTTATTCATCTGGACAGGTGCCTTATAATACAATACCGACTAATTATTATGGATATCCATTCGAAAATTCATTATCAAATGAATTACCAACAATATTTGAATCATCATTCAtaccattatcatcattatcatcatcaaaacaacagcagcagcaacaaaataaaatttcaccaACAATATTTGAATCATCATTAAtaccattatcatcattatcatcatcaaaacaacagcagcagcaacaaaatgaaatttcacCAACAACATCAgcatcagcaacatcaacaaAAATGTTGCCATCAACATCAAATCTATTACCGACTGCTGAAGAATTTGTGCCaagatttaataatttaaaaaattcatcagAATTATCAGAATTATCATTTGAATCAATAGATGATATTATAAGATATGAACTGTCAACAATACAAGATCAActacagcaacaacaacaacaacaacagcatcagcagcaacaacaaaaagaacaaagaaatgaaaatgaaatgattaaCCAAACAATGAAATTGccaaaaaattcaacaaaaaatataaaaaataacaataatacgGGTACGGGTACGGGTACGGGTACAATAAATAAAGTTATGATGTCTACACCATCGACAGGTCACAGTCACAATAGTCACAGTTATAGCAATCGTCAAAGAAATTTCGATGAGAATAGACTGAATGCTAGTGGAAgtgatggtggtggtggtgttggtAAATACtatcaacaaaatcaacaaaataatcaTCAGAGTACCAGTTATTATAGTGGAAATGGAGGTAATGGAGGCAATAGTAATGTcagtaacaataataaaaatcttcAGAAGGCAACAATTGAAACTAAGCCTTATTGGAAACATATTAGTACAACTTGGTATCATCCTCGTGAACCGGAATCTTATAGAAATGATAAACGTAGTGGGAGTGGTGGTGGTTATGGTGGTGCTTTTAGTGGTGATACCAGCGATTCAGATCCAGATGATTTACAAtcacaaaaaaattcaagaaaacatCAACACAATTTATTGTCAATAAAAGCACAAGATAATACTGTAActtctgctgctgctgctgctgctaacGAAAAATTATCACAGCGTGAAAAATTGATGAATGAAATCGATAATCGAAAATTAGAATGTTTAGTGTGTGTGGAACAAATCAAAGAAAATCAATCGGTATGGTCATGTAATAATTGCTATCACATTCTACATTTGAATTGCATCATAAAATGGGCAGTGAGTTCAATGTCTGATGAAGGTTGGCGTTGTCCAGCATGCCAGAATACAACGAAAACTATACcaagaaattattattgtttctgCGGTAAAACTCGTAATCCGCAATACAATCGAAATGATTTGGCACATAGCTGCGGTGAACAATGTGGCAGAAAATATAATTGCACACATCCATGTACATTGCAATGTCATCCGGGTCCTTGTCCACAGTGTCAGGCGAATGTTAATCGTGAATGTGGTTGCGGTAAAACACAAAAAACCATGCAATGTTACATGAAAGAAGATATACTGTGCGGTAATGTGTGCGGAAAACGATTGAATTGCGAAATACATACATGTGAGAAAGTTTGCCATCAAGGTAAATGCCCGAATTGTGAGCATAAAGTGGGTCAGAAATGTCATTGTGGTAAATTAGAAAGGCAAATTGCATGCGCACGGGAATCAAATGAGAAAAAGACATTTTCTTGTGGTAAACCTTGCAGTAAAATGCTGGCATGTGATAATCATAAATGCAAAGAAATCTGTCATTTGGGTAATTGTAAGCCATGCAAACTAACACCAGAAGCTATTACCTCATGTCCATGTGGTAAAATGCCAATATTGAAACATCAGCGAAAATCTTGTCTTGATCCAATTCCAGTTTGTACTGGAACTTgtggaaaaatattgaaatgtgGCCCACCAGcaTTTCCACATCACTGCATCAGTAAATGTCATCTGGGTAATTGTCCACCATGTAATAAGCAAACAGCAATAAAATGCCGTTGTGGTCATATGGATCAAATGATAAAATGTCGACAATTATCAACGCGTGCCGATGATGCCAGATGCAAGAAACGttgcacaaaaaaaagaagCTGTGGAAAGCACAAATGCAATCAGGAATGTTGTATCGATATCGATCACATTTGCCCATTGTCTTGCAACTACAATTTATCATGTGGTAAACATAAATGCGATCAACCATGTCATCGTGGTAATTGCCCGCCGTGTTATCGGAGTTCATTTGATGAATTGCATTGTGAATGTGGAGCAAATGTTATTTATCCTCCGGTACCGTGTGGTACAAAACGACCGGTTTGCGATAAACCATGCTCGAGACAACATAACTGCGATCATCCAGTGAAACATAACTGCCATTCAGCATCAACATGCCCACCATGCATGATATTCACAACGAAATGGTGTTTCGGTCATCATGAACAAAGAAAAACTATACCATGCAGTTGGAATAGTTTTGGTTGTGGTCTACCATGTAATAAAGATTTATCATGCGGTCGTCATAAATGCATAAAATCATGTCATGATGGTCAATGTCAAACTGCTGATGGTGaaatttgtattcaaaattgtacaaaaattcGTGTATTTTGCGGTCATAAATGCAATGCACCATGTCATAATGGTGATTGTCCAGAAACACCATGTAAAGAAGTGATTGAAATTACATGTCAATGCGGTAATCGAAAACAATTACGTACATGTCAAGATGTTTCAAGTGAATATCGTCGTATTGTTACTTCTCAGTTAGCATCAACAATGCAAGAAATGCAACGTggtaattttattgaattaagcGATATTATGTCACCattaaaaatgacaaataatagACAATTAGAATGTAATGAGGATTGCCGTCAAATTGAACGTAATCGTCGTTTAGCAATCGGTTTACAAATACGTAATCCAGAATTTACACcatcatcaaaaattttaacaaaatattcagAATTTGTACGTGGCTGGGCTAAAAAAGATCCGCAATTAGTTAAAACTATCCATGATACATTAACGAATTTAGTTAAATTATCGAAAGAGAGCAAACAAAAATCTCGTAGTCATTCATTTCCAACAATGAATCGTGATAAACGTCAATTAGTACATGAAATGTGCGGTATGTTTGGTGTTGATTCAGTTGCATATGATGCAGAACCAAATCGTAATGTTGTTGCAACTGCCCATAAGGAAAGATCTTGGCTTCCAGCTATGAGTGTCTTAGAGGTATTACAAAGAGAAAATGGACAACGTAGAATTCCAGTTCCAAACAATAATGCTTGGGGTATcaagaaatga
- Protein Sequence
- MNTNRNSYDDGSSNTTTKTTKNPSSENPSNIIGNDNNSNRNNYVDFNQFIRLHNFATPTYGNDGGNGGIAAAGMINNAGGIVGGGGGGGVAGGVIDDIFNFHQQQQQQQISPSSTLNNFYGLYSSGQVPYNTIPTNYYGYPFENSLSNELPTIFESSFIPLSSLSSSKQQQQQQNKISPTIFESSLIPLSSLSSSKQQQQQQNEISPTTSASATSTKMLPSTSNLLPTAEEFVPRFNNLKNSSELSELSFESIDDIIRYELSTIQDQLQQQQQQQQHQQQQQKEQRNENEMINQTMKLPKNSTKNIKNNNNTGTGTGTGTINKVMMSTPSTGHSHNSHSYSNRQRNFDENRLNASGSDGGGGVGKYYQQNQQNNHQSTSYYSGNGGNGGNSNVSNNNKNLQKATIETKPYWKHISTTWYHPREPESYRNDKRSGSGGGYGGAFSGDTSDSDPDDLQSQKNSRKHQHNLLSIKAQDNTVTSAAAAAANEKLSQREKLMNEIDNRKLECLVCVEQIKENQSVWSCNNCYHILHLNCIIKWAVSSMSDEGWRCPACQNTTKTIPRNYYCFCGKTRNPQYNRNDLAHSCGEQCGRKYNCTHPCTLQCHPGPCPQCQANVNRECGCGKTQKTMQCYMKEDILCGNVCGKRLNCEIHTCEKVCHQGKCPNCEHKVGQKCHCGKLERQIACARESNEKKTFSCGKPCSKMLACDNHKCKEICHLGNCKPCKLTPEAITSCPCGKMPILKHQRKSCLDPIPVCTGTCGKILKCGPPAFPHHCISKCHLGNCPPCNKQTAIKCRCGHMDQMIKCRQLSTRADDARCKKRCTKKRSCGKHKCNQECCIDIDHICPLSCNYNLSCGKHKCDQPCHRGNCPPCYRSSFDELHCECGANVIYPPVPCGTKRPVCDKPCSRQHNCDHPVKHNCHSASTCPPCMIFTTKWCFGHHEQRKTIPCSWNSFGCGLPCNKDLSCGRHKCIKSCHDGQCQTADGEICIQNCTKIRVFCGHKCNAPCHNGDCPETPCKEVIEITCQCGNRKQLRTCQDVSSEYRRIVTSQLASTMQEMQRGNFIELSDIMSPLKMTNNRQLECNEDCRQIERNRRLAIGLQIRNPEFTPSSKILTKYSEFVRGWAKKDPQLVKTIHDTLTNLVKLSKESKQKSRSHSFPTMNRDKRQLVHEMCGMFGVDSVAYDAEPNRNVVATAHKERSWLPAMSVLEVLQRENGQRRIPVPNNNAWGIKK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -