Vcin023062.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Villa cingulata
Gene Symbol
nfxl1
Assembly
GCA_951394055.1
Location
OX596021.1:3160458-3163541[+]

Transcription Factor Domain

TF Family
zf-NF-X1
Domain
zf-NF-X1 domain
PFAM
PF01422
TF Group
Zinc-Coordinating Group
Description
This domain is presumed to be a zinc binding domain. The following pattern describes the zinc finger. C-X(1-6)-H-X-C-X3-C(H/C)-X(3-4)-(H/C)-X(1-10)-C Where X can be any amino acid, and numbers in brackets indicate the number of residues. Two position can be either his or cys. This family includes Swiss:P40798, Swiss:Q12986 and Swiss:P53971. The zinc fingers in Swiss:Q12986 bind to DNA [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 21 2 4.3e+04 -5.1 1.9 15 19 205 209 205 209 0.85
2 21 1.6 3.4e+04 -3.8 1.3 4 10 240 246 240 246 0.86
3 21 1.9e-08 0.00041 21.5 16.9 1 19 254 271 254 271 0.99
4 21 6.8e-09 0.00014 23.0 13.2 1 18 307 325 307 326 0.97
5 21 1.4 3.1e+04 -3.7 1.8 6 10 351 355 350 355 0.89
6 21 2.9e-10 6.3e-06 27.3 11.4 1 19 361 379 361 379 0.98
7 21 0.95 2e+04 -3.1 0.5 1 7 404 409 403 411 0.49
8 21 7.4e-06 0.16 13.2 9.5 1 18 414 431 414 432 0.97
9 21 0.19 4.1e+03 -0.9 0.5 1 10 441 450 441 450 0.75
10 21 3.3e-05 0.71 11.2 15.8 1 18 466 483 466 484 0.91
11 21 5.1e-08 0.0011 20.1 12.3 3 18 495 510 493 511 0.91
12 21 2 4.3e+04 -4.3 1.5 5 10 539 544 539 544 0.83
13 21 1.7 3.6e+04 -3.9 0.5 9 12 549 552 548 554 0.72
14 21 0.037 7.9e+02 1.4 5.1 10 18 558 566 555 567 0.91
15 21 0.028 6e+02 1.8 5.7 4 12 581 589 579 589 0.89
16 21 0.34 7.3e+03 -1.7 0.4 6 10 647 651 646 653 0.89
17 21 0.00063 14 7.1 5.9 1 12 657 668 651 668 0.79
18 21 2 4.3e+04 -4.5 1.9 5 10 683 688 683 688 0.89
19 21 0.0075 1.6e+02 3.6 16.0 1 18 696 712 696 713 0.93
20 21 1.2e-05 0.26 12.5 9.6 1 18 764 783 764 784 0.85
21 21 2 4.3e+04 -4.2 1.3 6 10 814 818 813 818 0.85

Sequence Information

Coding Sequence
atgtcaaataaaaatgtatggaAAAATATTTCAACGACAACACAAAATTCTCATCCACAAAAGAAGCCGAATCCAAATCATCAAAAAGGAAAGgggaaaaataatacaaatacgaCAAAGGAATCGATGGGTGTGAATAATGATGGACTGTCGAAAAATTCTGTTCCCGTACCAGTAGTAACCAGTAAAAATAATGATGCAacattagaaaaatttgaagaaattcagaagaaaaatttaCGAAAAGCAAAAGAATTTGCCGAAGAATACAATTCTAGCTCAGATGAAGAAGATTTAAACACAAATGATCTTTTAAgtACGATTTTCAAAAAGTATTTTGGAGAAACTACACAGGTATCAAAGACACAAACATTTATTGAGAATTTTCTTCAGTCTGGATCAATTGTATGTCTCATCTGTATTGGTAGTGTTAAAAGGAACGATGGTGTTTGGTCATGTAAAAATTGTTactgtatttttcatttgaattgtaTTAAACGATGGGGAAATGATAGTATAGCACAACAAAAACTGTATTCAGACCAAGAACAGGGCTATTATAATAATGACGGTGAATATAtaccaaagaaaaataaaccGATACGATGGTATTGTCCAAAATGTCGAAAAGAAAATTCTCCCGCTGATATACCAAAATTTTATGAGTGTTTTTGCGGAAAAGAAATTAATCCACAAAATCATCCATGGCTAATACCACATTCTTGCGGTGAACAATGCGGAAAATATTTAGATCCAAATTGTGGGCATACGTGTTTATTATTATGTCATCCAGGACCATGCCCACCTTGTCCTCAGACAGTTTCGATATCTTGTAAATGCGGACGTTCTCCTCCAAAGTTTGTAAGATGTTTTCAGAAAATTTGGAGTTGTAATTCAAAATGTCTTCAAACACTGCCCTGCGgaatacataaatgtgaaaGCATCTGTCACGAAACAGGAAAATGTCCACCATGTAATaagaaaagtaaacaaaaatgtCAATGCGAAGCAGAAGTAGACGAAAGAAATTGCTGTGAATCGATTTGGCAATGTAAGAAAGTCTGCAATAAATTGCTGCCGTGTGGCATTCACAAATGTAAAAAGATTTGTCATGCTGGTGACTGCGGAAGTTGTTCTTTGGGACTGCCAAGAACATGTCCTTGTGGCAAAACAAAATCAGTTGCACCATGCACTGAAGCAATTGAAACTTGCGGGGATACATGCCAAAAATTATTAGCTTGCGGTGAACATTATTGCACAATGCGTTGTCATAAGAACGAATGTAGTCCATGCCTCACAATTGTACAAAAGAAATGTCGTTGTGGTTTACATACAAAGGAATTACCTTGTTCAAAGGTATTTTCGTGCGAGACAAAATGTAAACGATTAAGAGAATGCGAGAAGCATGCTTGCAATAAAAAATGTTGTGATGGTCAATGTCCTCCTTGTGACAAGATATGCAACAAGACTTTATCTTGTAAAAAGCATAAATGCAAATCAATATGTCACGATGGTCCTTGTTACCCGTGTGAATTGAAATCACAAATAAAATGTAGATGTGGATCTGCCGTAATAATTGTACCGTGTGGAAGAGAACGGAGAACGCGACCTCCAAAATGCCGCAAACCATGCAGAATACCATCAAAATGTCATCATCAAAATGCACACAATTGTCACATGGATGAATGCCCTCCatgtaataaaaaatgtgaACTTCGAAATGACACAACAAATTGTGATCATCCCTGTGAAGCTAAATGTCATGACGCTGTTAAGGTTTCTGTTAAAAAGAAGTCAAATAACATTTGGGATTGGAATCAAGAaaactttgaatATAAAAAGTTACCACATCCAAGATGCGAAATAAAAGTGATGGTTACTTGTCTGGGTGGACACGAAACTTGTTTATGGCCCTGTTGGAATTCAAAACCGACATCATGTCAGAAAATTTGCGGTCGTttattgaattgtaaaaatcATTATTGTCAAAAAATATGTCATACCGTATCTAATCTAGAGGATATGAATGAACAGATAGAATGTGCTCGATGTGAAGAAGAATGTAAATTACTCCGACCAGAAGGATGTAGTCATCTATGTAAAAAACCTTGCCATCCGCCACCAtgtcaaaaatgtaattttacgATAAGAACAAATTGTCATTGCGGTTTATCGCAAGTGTTTTACAAATGTTCTGAATTCTATGATTTAAATTTGACTAAGGATGAACTTCAAATGATGCAAGAAAAACTAAAATGCTGTGGAAATAGATGCATTCGAAATTATCCTTGTGGACATCGATGTACGTTAATTTGTCATTCTGGTATATGCTCGAATCCAGAAAGttgcaaaaagaaaatgaaaatttattgcgAATGTAAAAATCTAAAAACTGATATTACATGTGAAAAATATCGTAATGGTTTCATAAATCTTCAATGTGATGAAACATGTTTACGTAAAAAAGAACATGAGGATAGAATTCGTCAACAACGTGAAGAGATTCAACAAAAAGCAGAAGAGGAAAAAAATCGTTTAGAATTAGAAATGTTTGAAAAGAAATTTggtaaaaagaaatataaagaacgtaaaaatgttgaaaaaatacaagaaaaaaatgattatcATAAACTATTATGGATTTGCAGTGGAGCACTTTTGGttataatatcaattttaatatttatttattcagcgcaataa
Protein Sequence
MSNKNVWKNISTTTQNSHPQKKPNPNHQKGKGKNNTNTTKESMGVNNDGLSKNSVPVPVVTSKNNDATLEKFEEIQKKNLRKAKEFAEEYNSSSDEEDLNTNDLLSTIFKKYFGETTQVSKTQTFIENFLQSGSIVCLICIGSVKRNDGVWSCKNCYCIFHLNCIKRWGNDSIAQQKLYSDQEQGYYNNDGEYIPKKNKPIRWYCPKCRKENSPADIPKFYECFCGKEINPQNHPWLIPHSCGEQCGKYLDPNCGHTCLLLCHPGPCPPCPQTVSISCKCGRSPPKFVRCFQKIWSCNSKCLQTLPCGIHKCESICHETGKCPPCNKKSKQKCQCEAEVDERNCCESIWQCKKVCNKLLPCGIHKCKKICHAGDCGSCSLGLPRTCPCGKTKSVAPCTEAIETCGDTCQKLLACGEHYCTMRCHKNECSPCLTIVQKKCRCGLHTKELPCSKVFSCETKCKRLRECEKHACNKKCCDGQCPPCDKICNKTLSCKKHKCKSICHDGPCYPCELKSQIKCRCGSAVIIVPCGRERRTRPPKCRKPCRIPSKCHHQNAHNCHMDECPPCNKKCELRNDTTNCDHPCEAKCHDAVKVSVKKKSNNIWDWNQENFEYKKLPHPRCEIKVMVTCLGGHETCLWPCWNSKPTSCQKICGRLLNCKNHYCQKICHTVSNLEDMNEQIECARCEEECKLLRPEGCSHLCKKPCHPPPCQKCNFTIRTNCHCGLSQVFYKCSEFYDLNLTKDELQMMQEKLKCCGNRCIRNYPCGHRCTLICHSGICSNPESCKKKMKIYCECKNLKTDITCEKYRNGFINLQCDETCLRKKEHEDRIRQQREEIQQKAEEEKNRLELEMFEKKFGKKKYKERKNVEKIQEKNDYHKLLWICSGALLVIISILIFIYSAQ

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
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