Vcin038243.1
Basic Information
- Insect
- Villa cingulata
- Gene Symbol
- -
- Assembly
- GCA_951394055.1
- Location
- OX596025.1:17847034-17855781[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.004 0.49 12.1 0.7 1 23 467 489 467 489 0.95 2 11 5.6e-05 0.0069 18.0 1.4 2 23 501 522 500 522 0.96 3 11 0.047 5.9 8.8 0.2 2 23 773 795 772 795 0.93 4 11 1.7e-05 0.0021 19.6 2.4 2 23 921 943 920 943 0.96 5 11 0.0011 0.14 13.9 3.6 1 23 956 978 956 978 0.99 6 11 0.72 89 5.0 7.5 1 23 1054 1077 1054 1077 0.95 7 11 4.4e-05 0.0054 18.3 2.6 2 23 1093 1114 1092 1114 0.97 8 11 0.0094 1.2 11.0 1.6 2 23 1128 1150 1127 1150 0.95 9 11 0.054 6.7 8.6 1.8 1 20 1170 1189 1170 1191 0.95 10 11 1.3e-05 0.0016 20.0 1.1 1 20 1267 1286 1267 1289 0.94 11 11 9.5 1.2e+03 1.5 0.4 2 19 1301 1317 1300 1322 0.72
Sequence Information
- Coding Sequence
- ATGGATATCATAAAAGAacgatttaaatatttatgtcgcGTTTGTAtggaaaaatgtgaaaaaagttgtttaacaaaaatattcaattcagAAGTTGGTTCTGTACCAATATCACAAATGTTATCATTTACAGCACCAATTAATGTTATACCAGATGATGATTTACCATCATCAATATGCAATACTTGTTTAACTAAATTAATTTCTGCATATAATTTTCAACAAATGTGTATAGATACAGATTTAAAATTAAGATctgaattaaaaaatgaaaaaccaaaTCAAAATATATCAGTATCACCTACAATATTAGAACAAATACGTACTGGTGCAACAGATGGTATTCCAATTGATTCTGATGATGATATTGAATTTTGTGATGAGAAAAGTGAAGatattattacaatttgtgatgatgatgatgatgatgatgataatgaagataatgatgacgatgacatAGTTGAAATATCAAATGGAGAAAAGGTAAACAAAATTGTCGATGCGCCAACGTCgatatcatcatcaacatcaaaaaCAACATCGTTATCAGTGTCTTCATTATCAACATCAATGTTATCATCAACACCAAAAACAGCATCACTGTCATCATTATCAACGTCATTACCAGCTCCAGCtgcaacatcatcatcaacatcaagaTCAATCTCAGCAACAAAATTAACTTTTAAACCAGCTGTTgcaacatcatcaacatcaaggTTAATCCCAACGTCAACACTAGCTTCTGTACCAGCTGTTgcaacatcatcaacatctAGATTAATCCCAACGTCAACAACACTAGCTTCTGTACCAGCTGCTGCAACATCATCAACGTCAAGGTTAATCCCAGCGTCAACACTAGCTTCTGTACCAGCTGTTgcaacatcatcaacatctAGGTTAATCCCAACGTTAACACTAGCTTCTATACCAGCTGCTGCAACATCATCAACGTCAAGGTTAATCCCAACGTCAACACTAGCTTCTGTACCAGCTGCTGCAACATCATCAACGTCAAGGTTAATCCCAACGTCAACACTAGCTTCTGTACCAGCTGTTGCAAAATCATCAACATCTAGGTTAATTCCAATGTCAACACTAGCTTCTGTACCAGCTGCtgcaacatcatcatcaacatcaagaCCAATATCAGCGACAGCGTCAACATCATCTTCCACATCAGCAGTTGCAGTAACATCGACTTATATTAAATCAGCAAACAATGAAAGCAATATAATTAATGCATTTGATCAATCAGGAAAAAGGCGAAAAATTGCAATAATGCAAAATGGAAAACTCGAACATAAAATCCAAGTATCAAGAGAACCAAAAATGAGAGTAACATCATCAAATTCACAAATAATGAATCAActtttatcaaaaatgaaatgttataaatgtaatatatgtgaAAAAATATGCAATGGTTGGCCAGAATTTCAAAAACATGTAACTGGCCATAAACGAATAATACCAGCACTGAATGAAGATATTCAATGTCATTTTTGTGAGAAAATATTTgcgacatcatcatcattaaaattGCATTTGaatgaacataaaataaaagtttcatATCATGCTGATACTACAGGaTCTATTCCTACAGTTGATGTTAGTGTTAATGTGCAAACAGAAAATGAAACTGATCAGAATAAAATAGATGTAGTCCGAAATTTTTCAGCACATGAACATAATTATACTAGCACAACTAGAAAAtcatcattaattaatttaaatgaaaataatgatataataaaattaaataatcagcCGCAACAGCAGCCAAAACAAATAATACCAACAGCAAtaaatCCTCagcataaaaatcaaaaaaatacatttcgAATGAATCTTGAAACTTCTACTACTACAACCATCGATAATGAATCGAATcaaacaaaatcaaatcaattGAATGTTAATAATGAGATTATCGTAATCAAAGAAGAGAAAAGTGGTGATGAAGAAGGaCAGCATAAAATAGCACATCATAATGTATCTGAATGTGAGTCAATATCGATTTCTGCATTGGATCAAATTCGATCAGATGCTTCAGCACAATCAGGAGCAGTAGCATCACATGCATCGTCATTATCAGAAACAGCAGTATCACATACACCGTCATCAGATAATATACCATCGCTATCAACttcaattaaaaaatctgaGAATTACAATGAagaTTTGTTTCCAACAGAGGAAGTACAAATTAGTTTCGATAATTCCAATGAACCTGTAAGAGAAGAAAATGATCCATTTGCAGCTGTAGATGATTCAATTAATATAAATAAACCATTTTACGAAATGATGTGCAAAATATGTGGCCAGGGTTTAAATGATGAAACTAAATTGCGTTATCATATCGAAAATAGTCATATACTAACTTCATGTAATGTAGATAATAGAAATATTAATACAATTGTATCAGCATTTCCAAGTTCATCATTAAATTTTGTCACAAAAACTGAACAAAGaaaaatcaaaaatatccgGCGACAATCTGCTCCTGTCGatgaaaatgatacaaaaaaattatgttgtGAACTTTGTCATAAATTAATTGATAAGATAAATTTTGatcatcatttaaaatttgtacaCAGtaaaaatgaaattgatgataataatgaacgAAATTcaattatgaaaagaaaatcgaatatatttgaaaatactaTAAATAATGGTAATTCATTAAAATCGATATTAAATAGAAGACAATCATTATCAGCAACATTTATGTTGAATTGTAAATGTTCAATATGCTCAAAAGAATTCAGTAGTACAGATTTATTAAAACGTCATTTGAGAGTTGTACATATTTCTAATGGAGATATTAAGAAAGAgaaacaatGGTATAAATGTTCAACATGTCATAaagtatttttaatgaaatccaATTATGAAtcgcatataaaaattcatgaaatgcaaaaaaatcaaatcgaTAATGAAACATTGAATGAGAATGATGATACAGATtcaaatgatgaaaatgaaacagaAGACGaagaagagaataaaaaaaaagataaggATTATGAGATTGATaatgaagatgaagatgataGTGTTGAAGATGAAAATGACGATAATAACGATAATGATAAAGATGATGATAACgaaaatATACAAAAATCTTTACAACCACATAAATGCCTTTATTGTcgatatatttgtaaaaatcaaAGATTTTTTCGAAGACATTTAAAAGCAGAACATCCAGaatttatagaagaaaaattaaaaaatggttctaATTCTAATCAATGTCACATTTGTACAAAAACTTTATCATCTAAATCAAATTTAGATAGACATATAAATTTGCATTTTCACAATACAAATGATATTGAATTCGAAAATGcattaatatgtaaaatttgtaaaaattcatttactaaattaaaaagttttaaagATCATTTATCGAAAGCACATAAAGAAAAAAGATCAAATGCATTTAAATTAATGCAAATGAATTATGAATtaaaacaatataaatgtgaattttGTTCAATGAAATTCGATTCgaattttgaatacaaaaatcATACAACTGAATTTTGTACGATGATGAataaaagaacaaataaaacaaatgaaaatgaaacaaaaacgaaaataaataattcattaaataatGTATCGAAAACAtcatcaaaatcatcatcaacaacaacagcaacaacaacaacaacagctgtGAAAAGAAGCCAACAGCAACAAGATGAACatcaagatttaaaaaaaataaaattaaatgaagaacaTACATCTGTAATattgtttatatgtaaaatatgtggAAGGAAATTTTATCGAAATTCACATTTAATTGCACATCAACCTTTACATAAAAACGgATATAAACGAGTAAAACAAGAAATACGTTGTAAAAtctgtaataaatatttaaaagaagaTTCACTTTCGTATCATTTCGGTGTTTATCATGCATTCAAAGAGGAGATTGTTAAAAGCGGTGAATAtcgtaaaaatttacaaattcatgATGTAATTAAATTGAATCGTGATAATGATAAATCAgcaaaaattaatatcaaaagaagaaaaagtatGCATCATATAGAAGAAACGAcaacaaaaacagaaacaacatcatcattacaaaattcaaatttgaatcgAAGAATTACACGAAGAAATACCATTGCATTTGCTGATAAGTCAATGATGATGGATAGACGTAATTCGAATGATATGGAGACTGACATCGATACAAATAATGGTGAAAATACTAGAAGTAGCATGATCAAGAATATGAGTAGTAATAGAAGTGGAAGAGGCGATAGCAGTATTCAtattaataatgatgaaaatgtaATGGAAAATACAGACAGTGAAAATGAAGAAGCAGAAttgaattACAATGAtgatttatttgtaaataaaaaagattCAAATGGAGGAATAGTGGAATCAGAAGAATTTgaaacaataatattatatggaAATTTCAATGAATGA
- Protein Sequence
- MDIIKERFKYLCRVCMEKCEKSCLTKIFNSEVGSVPISQMLSFTAPINVIPDDDLPSSICNTCLTKLISAYNFQQMCIDTDLKLRSELKNEKPNQNISVSPTILEQIRTGATDGIPIDSDDDIEFCDEKSEDIITICDDDDDDDDNEDNDDDDIVEISNGEKVNKIVDAPTSISSSTSKTTSLSVSSLSTSMLSSTPKTASLSSLSTSLPAPAATSSSTSRSISATKLTFKPAVATSSTSRLIPTSTLASVPAVATSSTSRLIPTSTTLASVPAAATSSTSRLIPASTLASVPAVATSSTSRLIPTLTLASIPAAATSSTSRLIPTSTLASVPAAATSSTSRLIPTSTLASVPAVAKSSTSRLIPMSTLASVPAAATSSSTSRPISATASTSSSTSAVAVTSTYIKSANNESNIINAFDQSGKRRKIAIMQNGKLEHKIQVSREPKMRVTSSNSQIMNQLLSKMKCYKCNICEKICNGWPEFQKHVTGHKRIIPALNEDIQCHFCEKIFATSSSLKLHLNEHKIKVSYHADTTGSIPTVDVSVNVQTENETDQNKIDVVRNFSAHEHNYTSTTRKSSLINLNENNDIIKLNNQPQQQPKQIIPTAINPQHKNQKNTFRMNLETSTTTTIDNESNQTKSNQLNVNNEIIVIKEEKSGDEEGQHKIAHHNVSECESISISALDQIRSDASAQSGAVASHASSLSETAVSHTPSSDNIPSLSTSIKKSENYNEDLFPTEEVQISFDNSNEPVREENDPFAAVDDSININKPFYEMMCKICGQGLNDETKLRYHIENSHILTSCNVDNRNINTIVSAFPSSSLNFVTKTEQRKIKNIRRQSAPVDENDTKKLCCELCHKLIDKINFDHHLKFVHSKNEIDDNNERNSIMKRKSNIFENTINNGNSLKSILNRRQSLSATFMLNCKCSICSKEFSSTDLLKRHLRVVHISNGDIKKEKQWYKCSTCHKVFLMKSNYESHIKIHEMQKNQIDNETLNENDDTDSNDENETEDEEENKKKDKDYEIDNEDEDDSVEDENDDNNDNDKDDDNENIQKSLQPHKCLYCRYICKNQRFFRRHLKAEHPEFIEEKLKNGSNSNQCHICTKTLSSKSNLDRHINLHFHNTNDIEFENALICKICKNSFTKLKSFKDHLSKAHKEKRSNAFKLMQMNYELKQYKCEFCSMKFDSNFEYKNHTTEFCTMMNKRTNKTNENETKTKINNSLNNVSKTSSKSSSTTTATTTTTAVKRSQQQQDEHQDLKKIKLNEEHTSVILFICKICGRKFYRNSHLIAHQPLHKNGYKRVKQEIRCKICNKYLKEDSLSYHFGVYHAFKEEIVKSGEYRKNLQIHDVIKLNRDNDKSAKINIKRRKSMHHIEETTTKTETTSSLQNSNLNRRITRRNTIAFADKSMMMDRRNSNDMETDIDTNNGENTRSSMIKNMSSNRSGRGDSSIHINNDENVMENTDSENEEAELNYNDDLFVNKKDSNGGIVESEEFETIILYGNFNE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -