Vcin036779.1
Basic Information
- Insect
- Villa cingulata
- Gene Symbol
- POL
- Assembly
- GCA_951394055.1
- Location
- OX596025.1:10553-27244[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.0012 0.15 13.8 2.6 3 23 164 185 163 185 0.93 2 11 0.00016 0.02 16.5 0.6 2 23 225 246 224 246 0.97 3 11 0.00011 0.014 17.0 2.2 1 23 252 274 252 274 0.98 4 11 0.0012 0.15 13.8 2.6 3 23 1243 1264 1242 1264 0.93 5 11 0.00016 0.02 16.5 0.6 2 23 1304 1325 1303 1325 0.97 6 11 0.00011 0.014 17.0 2.2 1 23 1331 1353 1331 1353 0.98 7 11 9.5 1.2e+03 1.5 2.1 1 12 1359 1370 1359 1375 0.82 8 11 2.9e-05 0.0036 18.9 3.9 1 23 1381 1403 1381 1403 0.98 9 11 0.0015 0.19 13.5 0.7 1 23 1409 1431 1409 1431 0.96 10 11 0.016 1.9 10.3 4.0 1 23 1437 1459 1437 1459 0.98 11 11 0.00074 0.091 14.5 1.9 1 23 1465 1487 1465 1487 0.99
Sequence Information
- Coding Sequence
- atggatattttaaatttaaagcaGGAAGAATTTAGAGAAAAACAATGTACTAATTTAAATGTTATATTAAATCCTGATCCTAGTGAAGTGGTTGAACATATTAACAAGTTACAGAAAAAGTGTGGAGAGATCTACATAAGTGAAAAagatgttttcaatattttgtgcATATTTTGTGAAAATTCTTTTGAAGAGGCACAACATTTTTTCACTCATATTAGATGTGATCACGAGGAAGGAGAAAGTTGTATTGCTAAAGCTACTGAAAATGATCCTTTGGAAATACGAAGTGACAATGGTAATCAAGAAGAAATGGAAccaataattaatgaaaaaagtaaatGTGAGAATGTAGTCTTTCCGGAAAAGAGTGCATTCGATGAGagtaaaacacaaaatttagttgaaaatatattgataggagacaattttaaaaatgaattagaaACCAGAAAAGATTctgaagtaaaaaataaaaatacagaatTTTGCAATGTTTGTTATAAAACGTTCAATTCCAAAAGAACTTTGCAGCGACATAAAGTGCGTGAACACCCGAAAAGGAAATCAAAGTCAAAAACACAATCTCAAGTCGAAACTGATGAAAAAAATGATGGTGAACAAAGTAAGGACGACGAAAAATCTATAGAATCCGAAACTGATGACcctttaaaatgtaaatattgtgGTCGTCGTTTAGCAGACAACTTTACTTTAAAAGAACATGTAAGAATTCATACAGGGGAAAGACCATATCAGTGTCAAATATGTGGTAAGCAGTTTAGAACTGCAGGTTGTGTACGACAACATGAAAAATCGCATAATGATATTCGACAATTCAAATGTGAAAAATGTGAATCgacatttaaaattAAAATAGAAGATATTGATAGCGATCAAgatagtagtaataatagtatTGACGAATATTCAGATAGTCTTAGCACACAAAATTCACCAGaacaagaaagaaaagaaacaacaacaatggCAGCATTTGATATTAGTACAACGCTTAAAATAATACCAGAATTCAATGGTGAACCACAAATATTGACAAACTTTGTAAACTTGGTTGAATGTCTATCAGAAACATTAAAAGATAATACAGAAgtggaaaaattaataaaatttatacttaaaactCGTATAACAGATAAAGTTCGTAATAAAATTAGTAACGAACAAATACCAACAacattaaaacaatttaaagaactatttgaaaaaatttataagacaAAAAAGAAcccattgaaaattcaaaatgacttaTATCGTATTCAGCAAGGAAATAAAACAGTACTCAAATTTGCTGAAGAAATTGAAACATTGGTtgctgaattaaatgaaatacatatatcggAACAAGGTGAAGCTAATAAAACAGTCATCGCTAACATAAATGATGCACTAGCGCTAAATGCATTCAAATCTGGACTGAAAGAACCATTGAAAATGACAATATTTGCGGCCCAACCAAAAACACTTAATGAAGCAGTTAAGCTAGCATCTGAAATTGATTCTAgtgtgacagaaaatgaaattcaaacccTTGGAACAATAAATGCATGCTTTTTAATAGAAGATGAATATCTACCTCAGAAACTCCATGTTGTAGAAGAAAACTTTCCAATAATAACAGATGGCATCATTGGCAGAGACTTTCTAGCAAATTACAAGTGTAAAATAGATTATGAAGATTTCACAATCACAATTTGTACAGATGAAACAGATTTCATCGTGCCCCTTATtaccaaaataaaagaagaaaaatacatacgGATAGCAGCGCGAAAAGAATCGATTCAAGCAATTAATTGTCAAGTCAATGAAGATAGCATTATTTTGAACAAAGAAATTCAAGACGGTGTTTTTATCGCTAATTCTATTATACCATCAAAAGgagttgtacatataaaaattctaaatacaacTGACAAtgaagttaaaattaaattacccCCGTTGGAAATACTTCCATTAAAAGACTTCCACATAATAAGTAAAATAGATACAAAAGGAatcTTGGATGACAAATTCCCATTAACAAGACTAGAAGATATTCTAGATAATCTAGGCAAAGCGAAATATTTTTCAACGCTGGATCTAACAAGCTCGTTTCATCAAATTGAACTGGAGAAAGAATCTAGACCATTAAAAGCATTTTCAACTAGTAAAGgacattttcaattcaaaagatTACCATTTGGCCTAAAAATTTCAACGAATAGTTTTCAACGTATGTTATCCATAGCTTTATCAGGTCTTGATTCTCAAGCATTCttatatgtagatgatattATTATCTTCGGATGCAGTCTCAGACATCAcaacaacaatttaattaaaacttttcaaagattgagaaaatataacattaaattgAATCCAGAGAAATGCAATTTCTTACAATCAGAAGTAGTCTATCTGGGACATCTAATAACTAGCGAAGGAGTAAAAACAGATCCTAAAAAATACGACACAGTAGTTAATTATCCAACTCCAACGAATGCAAATGAAACTAAAAGATTTGTAGCATTCTGTAACTATTACAGAAAATTCATTCCGAATTTTGCATCTATTGCAAAACCACTTAATATGTTATGTCGTAaaaacacttcatttatttGGTCTAAAGAATGCGACacatcatttcaaaatttaaaacaaaaattactaaacccACCCATACTGCAATATCCAGATTTTTCAAAACCTTTCATCTTAACAACAGACGCATCAAATTTCGCACTAGGAGCAGTATtatctcaaggagaaattggcaAAGATTTACCAATATCATATGCGAGTAGAAcattaaataaacatgaaatgaataaatcaataattgaaaaagagtTATTAGGAATTTACTGGGCAATCAATCATTTCAGACCTTATCTCTACGGCAGAAAATTTACAGTAGTCACAGATCACCGCCCACTTATAAGCTTATTCACACATAAGAATCCTTCATCTAAAATGACGCGTATTAGACTAGATCTAATGGATTAcgatttcgaaataaaatataaaaagggtttattgaacaccaatgcagatgccttatcacgattacaattagactcaaatgtgcttaaaaatatgataccaactacaaatgaaattaaagtatTAACACGTAATATgctcaaagaaaaagaaaaacagaaaaatactgcattaaatgagattgatcaaacacaaccggtagagactggccatctcagcatctgggaatgttcatcaatttctcaaGAAGAATTTAGAGAAAAACAATGTACTAATTTAAATGTTATATTAAATCCTGATCCTAGTGAAGTGGTTGAACATATTAACAAGTTACAGAAAAAGTGTGGAGAGATCTACATAAGTGAAAAagatgttttcaatattttgtgcATATTTTGTGAAAATTCTTTTGAAGAGGCACAACATTTTTTCACTCATATTAGATGTGATCACGAGGAAGGAGAAAGTTGTATTGCTAAAGCTACTGAAAATGATCCTTTGGAAATACGAAGTGACAATGGTAATCAAGAAGAAATGGAAccaataattaatgaaaaaagtaaatGTGAGAATGTAGTCTTTCCGGAAAAGAGTGCATTCGATGAGagtaaaacacaaaatttagttgaaaatatattgataggagacaattttaaaaatgaattagaaACCAGAAAAGATTctgaagtaaaaaataaaaatacagaatTTTGCAATGTTTGTTATAAAACGTTCAATTCCAAAAGAACTTTGCAGCGACATAAAGTGCGTGAACACCCGAAAAGGAAATCAAAGTCAAAAACACAATCTCAAGTCGAAACTGATGAAAAAAATGATGGTGAACAAAGTAAGGACGACGAAAAATCTATAGAATCCGAAACTGATGACcctttaaaatgtaaatattgtgGTCGTCGTTTAGCAGACAACTTTACTTTAAAAGAACATGTAAGAATTCATACAGGGGAAAGACCATATCAGTGTCAAATATGTGGTAAGCAGTTTAGAACTGCAGGTTGTGTACGACAACATGAAAAATCGCATAATGATATTCGACAATTCAAATGTGAAAAATGTGAATCgacatttaaaaAACATGAAAGAGTCCACACAGGTGAAAAAccatttaaatgtaatttttgtggTAAGTGTTTTCAAACAAGTGGTGGTTTAAGCAGACATACAAAAATTCATACTGGAAACAGGCCGCACAAATGTCAGTATTGTGATAGAAGTTTTGCTGCTAAAGCCGTTCTGAATAATCATGTCGTAATGCATAAAGGGGAGAGACCATTTGTTTGTACAACATGTAATGCAACATTTTCTtgtaaaaagaatttaaaatctCATGAAAAAATTCATTCCGATTACCGTGGATATGTTTGTAAAATTTGTGGAGATGCATTTAAACAATATACCACTTTACATGGCCACATGAAAAGACACAAGATGAAAGTTACAGTATAA
- Protein Sequence
- MDILNLKQEEFREKQCTNLNVILNPDPSEVVEHINKLQKKCGEIYISEKDVFNILCIFCENSFEEAQHFFTHIRCDHEEGESCIAKATENDPLEIRSDNGNQEEMEPIINEKSKCENVVFPEKSAFDESKTQNLVENILIGDNFKNELETRKDSEVKNKNTEFCNVCYKTFNSKRTLQRHKVREHPKRKSKSKTQSQVETDEKNDGEQSKDDEKSIESETDDPLKCKYCGRRLADNFTLKEHVRIHTGERPYQCQICGKQFRTAGCVRQHEKSHNDIRQFKCEKCESTFKIKIEDIDSDQDSSNNSIDEYSDSLSTQNSPEQERKETTTMAAFDISTTLKIIPEFNGEPQILTNFVNLVECLSETLKDNTEVEKLIKFILKTRITDKVRNKISNEQIPTTLKQFKELFEKIYKTKKNPLKIQNDLYRIQQGNKTVLKFAEEIETLVAELNEIHISEQGEANKTVIANINDALALNAFKSGLKEPLKMTIFAAQPKTLNEAVKLASEIDSSVTENEIQTLGTINACFLIEDEYLPQKLHVVEENFPIITDGIIGRDFLANYKCKIDYEDFTITICTDETDFIVPLITKIKEEKYIRIAARKESIQAINCQVNEDSIILNKEIQDGVFIANSIIPSKGVVHIKILNTTDNEVKIKLPPLEILPLKDFHIISKIDTKGILDDKFPLTRLEDILDNLGKAKYFSTLDLTSSFHQIELEKESRPLKAFSTSKGHFQFKRLPFGLKISTNSFQRMLSIALSGLDSQAFLYVDDIIIFGCSLRHHNNNLIKTFQRLRKYNIKLNPEKCNFLQSEVVYLGHLITSEGVKTDPKKYDTVVNYPTPTNANETKRFVAFCNYYRKFIPNFASIAKPLNMLCRKNTSFIWSKECDTSFQNLKQKLLNPPILQYPDFSKPFILTTDASNFALGAVLSQGEIGKDLPISYASRTLNKHEMNKSIIEKELLGIYWAINHFRPYLYGRKFTVVTDHRPLISLFTHKNPSSKMTRIRLDLMDYDFEIKYKKGLLNTNADALSRLQLDSNVLKNMIPTTNEIKVLTRNMLKEKEKQKNTALNEIDQTQPVETGHLSIWECSSISQEEFREKQCTNLNVILNPDPSEVVEHINKLQKKCGEIYISEKDVFNILCIFCENSFEEAQHFFTHIRCDHEEGESCIAKATENDPLEIRSDNGNQEEMEPIINEKSKCENVVFPEKSAFDESKTQNLVENILIGDNFKNELETRKDSEVKNKNTEFCNVCYKTFNSKRTLQRHKVREHPKRKSKSKTQSQVETDEKNDGEQSKDDEKSIESETDDPLKCKYCGRRLADNFTLKEHVRIHTGERPYQCQICGKQFRTAGCVRQHEKSHNDIRQFKCEKCESTFKKHERVHTGEKPFKCNFCGKCFQTSGGLSRHTKIHTGNRPHKCQYCDRSFAAKAVLNNHVVMHKGERPFVCTTCNATFSCKKNLKSHEKIHSDYRGYVCKICGDAFKQYTTLHGHMKRHKMKVTV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -