Vcin035608.1
Basic Information
- Insect
- Villa cingulata
- Gene Symbol
- -
- Assembly
- GCA_951394055.1
- Location
- OX596024.1:16069514-16075092[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.15 18 7.2 1.0 1 23 1194 1217 1194 1217 0.95 2 13 0.34 42 6.1 1.1 1 23 1339 1361 1339 1361 0.95 3 13 4e-05 0.0049 18.4 1.3 2 23 1364 1385 1364 1385 0.97 4 13 1.4e-05 0.0018 19.8 1.5 1 23 1391 1413 1391 1413 0.98 5 13 1.3e-05 0.0016 20.0 8.0 2 23 1420 1442 1419 1442 0.95 6 13 8.7 1.1e+03 1.6 0.0 5 23 1455 1473 1453 1473 0.95 7 13 0.037 4.6 9.1 4.1 3 23 1480 1501 1478 1501 0.95 8 13 0.097 12 7.8 0.2 2 23 1512 1532 1512 1532 0.96 9 13 6.7e-05 0.0083 17.7 0.7 1 19 1538 1556 1538 1560 0.95 10 13 0.0057 0.71 11.7 0.2 1 23 1568 1590 1568 1590 0.98 11 13 0.00026 0.032 15.9 7.5 1 23 1596 1618 1596 1619 0.96 12 13 0.00034 0.042 15.5 6.3 1 23 1624 1646 1624 1646 0.99 13 13 0.015 1.9 10.3 5.6 1 23 1652 1674 1652 1675 0.93
Sequence Information
- Coding Sequence
- ATGTTTGAACAAATACCTTGCCCGGTGTGCACGTTATACTTGCACCCGGGAATGAATTTAGCTGACCATTTGGAGACTCATCCGAAGGAACAAGTTATCAAGGCACTTGTTCTCCTTGCTACAAAAACGGCACatacattatcatcattatcacaaACATCATGTAGACCAGTTGCAGCAATAGCAGCTACCACATCGGTGCCAATGGAAACTGTATCAGAAACGGAAACAGATTCATGTAGTTTGGAAAAATCACAGAAAAGAGATAATTCACTTCATGCTCCGGTCCCTCCTCCGCCACCATCACCACCACCTTCATTGTCATCAACTCTAATTCAAAGAGGTTACCCACACTTGCAaacgtcgtcatcatcatctgaTAATGCTGAATTTCCGAATCCAAAAGAACCCAAAAATGGATATATACCTTCGAATCAAAGGAATCTAATGATTGTCAACAGGCAAAGTACAATGGTCTATCAGGCTGGAGATCATTCTGATGAAAACATTTTGGGACAACAAATGGCCTTGGCACCTTCACCGTTACAACTATTCAATATATCATCCTATAATCAAGGAAAATTTTTAACACCTCCCCCAGCTTACGGAGCTGCAATTAGTCAATTAAGATCTCAAAACAACCAAAGTAGTAATAATTATGCTCGCCAAAATCAAAGTCAATTGGGTAATACTGCTCCGTATTGTAATGCATCTGATCAGAACGCTTTAGACTACACCGTAACAAAAAATCTACTTCCTCGGCAGAATTCTCAAagacattatcatcatcaacaacaaatgcagcaacagcaacatcatCAAATTACATGTTCGTCAAAACAGAACAATTCATTAActacattatcatcatcatcatcatcatcttcatcatcatcatcatcatcatcatcgtcgtcttTTTTAATGAAACGTTCAATGTCACCAAGATCTATGCGATCATTTTCTCCCAGAATAGAACCGTCAATATCACCATCTCCGTCAGTTTTAAGATTTGCTGAAAGTCCCATAACTGCACAATATGTTGAACGTGATAATGGTGATTTTATTGTTCAGGAGACACCACGTCATGTAGTTGAATGCGTTGAAAAGGATGACGGAGAATTTTCTGTAGTTGAAAAAGTAATTCAATCACCGCCAAGTGTTGTTCAATTTCATGAAAATAGTGacagtgatgatgatgatcaacaacgacaacaacataAACAGAATAGTtatcataattttcaaaatatatcgGAAAATAGTAGTGACAATTATGTCGttgacaaaaataaatgtaatgaaACATTGATGGATGAAATAAATGCAAATGATGATAATCATGATGATTCAAGCATTGATGAAATGAATAACAAAGAACAAAGGCAATCGCAAAgctcaaaacaaaaaaagactGTCTCAGGATTAACAGTGATTagtaatgtaaaattaaatccCAACGAATCTTTAGATTTAATGGAAAATATAATGGCATctagtaataataatgaagtAGAAGTATTATGGAGCGGAATAGTTAATCCAATCATAGAAAAAATTGAGCAGGAAGATAGTAATAACAAAACGAGACATGAAATCAATGAAAATGacgaaaatgaagaaaatgaagatgGAGTAACAAAATcgaatgataaattttctaacatACATGAAGAGCTTTCTTCTAAAGTATcttttaaagaagaagaaaatatcatGAACACGAACAAGAAAGAATCCTTAACAGCAGACGTAAGAGAATCTGTGAGCGAAAAGATTGAAATACAGCTACAACCATCATCGTCTTCAacgttttcttcttcttcatcaatTTCAGCCGCTGCAACAAGTGTAATACGTTTGGCATCAACTCCAATATCAGTATCAAGTGCCATCGAAATCACAAAAGTATCAGAAAAAACCGAAATTGAAATTCGttcaattaaaaaagaaaaagataatgaaaataaatcacaAATAACTCCAGCTTCTTACAAATCAAGTTATATCCGAGAAGCTACCAGGAGACCATTCAGAAAAACTCCAAAGAAATTGGTggtcaaattcaaaaatgcaCCAGCTGCTAGTGTACAAGATAATAATAACAGTGTATCTCAACAGACTGATAATAAACAGATAGCAGGAACGACGAAACAGATTTCCcctaataaaattgaaattgagaaAAATGCGATTATTGATTTAGATttgaaatgtgaaaaaaatgacATTGTAAGCATTATAAGTGTTCACAAAGAATGCATCATTGAAAACGAAACATCAGAAAATCGGCAACAAGATGAAAACCAAAGCCAAattaaggaaaataaaaacaaatattctgATACTGTTTCAGTTTCAGaattaaaaaatgtagaaaGTTCGATGTGTgcagaaaaagaagaagacaaGAAAATAAAGATTCAAACGAAAGAGGAAGAAAGAGAGAATGAAATACAACCACCCCTAACACCATCAATTCCAGCAATACATCCAATGATTGTACATGAATCATCGCTGGCCGAAGAACCAAGTTCAGAAGAAGTAAATAGTTGCGAAAACATTAGTGTTAATTTACCGTTAAATAACGATGATAAATATACGGAACTTTCAAGATTATTGGATAGTTGTTGGAAACaagatgaaaataaatcaaatttaaataaaactaataaaccatcaataaataataatgttggAATGGATTCAGGAGAACCATTTATAGCTACCATTGATATATCTTCAGATAATAATACTTCCATGAATTCGATACAACTAACTGAAACAAGTGATTTCTGTAACTTTGAATCTCCATCacagaaaatgaatgaaacaaTATCATcgtcaacatcaacaacaagaTCATTATCTTCAATATCTTTAAATTCATTTCCATCAACATCGAGTTTTTCGAAACCATCAACTAGTTCCTCAGCATTACAGCAAGAACAGCAACAGACtgaaaatcaacaacaaaattattcatCATCCCAACAGCAATCGCAACcaaattataatgattatccatTTAGTTTTTTGTATTCAGTGAATAATAGTAATTTGGATAAGAATCGTTTATCACCATTTTATCCGACTGAATTGTGGAAAAATTATAACGGACCAATATTTCAAACGCAAACTGATTTTCAAGATCTTGAAGACAGAGAACGAAGTAGTTATATTGATTTGGATGCATTGAAAAAAGCTAACAGTTCAGATGCAGTTCAATATGTTGAAGCGTTAAATATACGAACTGATGAAAAAATGCCAGCTAAAGGTGAAATATCAGAGCAAGAAAGCAATGGTGATATTGAGAATTCATGGAGTCAACCgCTGGGCGGTGAACAACCTTATCGATTCTTCAATCATTTAGAAAATTACGTAGCTAGAGAAAGTTGGCGGGATGAAGGATTTACTTGTCCACAGACTGTTATCGAAGATATTAAACCAAAACCaTCGTTGATTCCGCCGTCGTCAAGTGGGGAAACGACTGAAACTCAGGAAGTATTGACTGTTAAAAAATCACGAAAATCGAAAAAGACTAGTGCCAACAGCACGAATGTAAAAAAACCTAAAATCTTTACATGCGATCACTGTCCTAGCACATTTCCAAAATTACGAGATCGAAATCTACATTTGATTGTGAATCATGATTACAAAAGAGTTAATCGCCGTCTAGTTCGAGAACCGAGACCAGCTACAATAACATCAGCTGATCAACAACAACAGTTACAGCAGCAATCACAGCAATCGGTCCTGTTACAGCAACCACCACCGTTAGATAATCAACAACCTACAGTTGCAACATTATTTACAGGAACAAATGGAGGAGATGTCAAAACTGAAACAGCCGTATCAGGAATTGTTTCGACAACGGACACAACACACTTCCCTAGAACTAAATATGATTCGATTAGAGCTGGTGTCTATCGTATGCTAATGAATTTCAATTTGAGTGTACTGAAACAGAAGCAAAATGTTGAAATCGATGAGAATCTATTCGAGTTGAAAACATTCTCTTGTTTTACATGCAAACGAAATTTCATAAGCGTAAAACAATTCGATGAACATTTGGCTGAACATCAGGCTGAATGTTTTACATGTGGTCGAAAATTTACACGTTGGTCATACTTTGCGATACATTTGAAACGTCATATAGGTTGGAAGGATTTCGAATGTACGCATTGTAGCAAAAGATTTGTCATACGAAGTGCATTAATTGAACACATGAGAATGCATACCGGTATCAGTCCATTGAAATGTAAACATTGTGGAAAGAGTTTTAAACGTTATTCGAATTTAACACAACACAAACGTTTATGTCATAGTACACGCAGTAAAAAGAAGAAGGAATATGTTTGCTATTGCGGTGAAGTATTACCATCGAAAGCACGTTTTGTATGGCATCGTGAAATTCATGATACAAAACCGAAATGCTGCCCGTATTGTAGAGATCGTTTTATACATTTGAACAGTCTCAGACGTCATATTCGTTTAGTTCATTCAGAAAAATTCACTTACGATCAGCCAGCTGAATGTCCAATCTGTAATCAGATATATGCCAAAAATAGTTTAAAAGGACATATGTCAACTCATTCAATGGAAACACAACATGAATGTGCAATATGCAATAAATCGTTTAGCACAAAatggaatttaaaaattcatagtTGGGTGCATGCAAATCGTACAGCAAAACCATATAAATGCGATATGTGTATTAAAGCATTCGTACGTGAGATCgattataaaaatcatataaatgcTCATAAACAGATAAAACCATTCACATGTGAATATTGTGGCTGTAAATTTAtacgaaaatataattatttacgtCATCGTCGAGAACATCATGGACAAAAGAAATTCCGTTGTGAATTATGCGGTAAACAATTTCATcgacattattatttaattgaacaTCGTCGAACGCATACAGGTGAAAGACCATTTTTATGTACGATTTGCGGTAAAAgttcaacaacaaaaacaaatcataataaacatttaaaaattcatcattCTAGAGATCCATTCACATCtgaaacataa
- Protein Sequence
- MFEQIPCPVCTLYLHPGMNLADHLETHPKEQVIKALVLLATKTAHTLSSLSQTSCRPVAAIAATTSVPMETVSETETDSCSLEKSQKRDNSLHAPVPPPPPSPPPSLSSTLIQRGYPHLQTSSSSSDNAEFPNPKEPKNGYIPSNQRNLMIVNRQSTMVYQAGDHSDENILGQQMALAPSPLQLFNISSYNQGKFLTPPPAYGAAISQLRSQNNQSSNNYARQNQSQLGNTAPYCNASDQNALDYTVTKNLLPRQNSQRHYHHQQQMQQQQHHQITCSSKQNNSLTTLSSSSSSSSSSSSSSSSSSFLMKRSMSPRSMRSFSPRIEPSISPSPSVLRFAESPITAQYVERDNGDFIVQETPRHVVECVEKDDGEFSVVEKVIQSPPSVVQFHENSDSDDDDQQRQQHKQNSYHNFQNISENSSDNYVVDKNKCNETLMDEINANDDNHDDSSIDEMNNKEQRQSQSSKQKKTVSGLTVISNVKLNPNESLDLMENIMASSNNNEVEVLWSGIVNPIIEKIEQEDSNNKTRHEINENDENEENEDGVTKSNDKFSNIHEELSSKVSFKEEENIMNTNKKESLTADVRESVSEKIEIQLQPSSSSTFSSSSSISAAATSVIRLASTPISVSSAIEITKVSEKTEIEIRSIKKEKDNENKSQITPASYKSSYIREATRRPFRKTPKKLVVKFKNAPAASVQDNNNSVSQQTDNKQIAGTTKQISPNKIEIEKNAIIDLDLKCEKNDIVSIISVHKECIIENETSENRQQDENQSQIKENKNKYSDTVSVSELKNVESSMCAEKEEDKKIKIQTKEEERENEIQPPLTPSIPAIHPMIVHESSLAEEPSSEEVNSCENISVNLPLNNDDKYTELSRLLDSCWKQDENKSNLNKTNKPSINNNVGMDSGEPFIATIDISSDNNTSMNSIQLTETSDFCNFESPSQKMNETISSSTSTTRSLSSISLNSFPSTSSFSKPSTSSSALQQEQQQTENQQQNYSSSQQQSQPNYNDYPFSFLYSVNNSNLDKNRLSPFYPTELWKNYNGPIFQTQTDFQDLEDRERSSYIDLDALKKANSSDAVQYVEALNIRTDEKMPAKGEISEQESNGDIENSWSQPLGGEQPYRFFNHLENYVARESWRDEGFTCPQTVIEDIKPKPSLIPPSSSGETTETQEVLTVKKSRKSKKTSANSTNVKKPKIFTCDHCPSTFPKLRDRNLHLIVNHDYKRVNRRLVREPRPATITSADQQQQLQQQSQQSVLLQQPPPLDNQQPTVATLFTGTNGGDVKTETAVSGIVSTTDTTHFPRTKYDSIRAGVYRMLMNFNLSVLKQKQNVEIDENLFELKTFSCFTCKRNFISVKQFDEHLAEHQAECFTCGRKFTRWSYFAIHLKRHIGWKDFECTHCSKRFVIRSALIEHMRMHTGISPLKCKHCGKSFKRYSNLTQHKRLCHSTRSKKKKEYVCYCGEVLPSKARFVWHREIHDTKPKCCPYCRDRFIHLNSLRRHIRLVHSEKFTYDQPAECPICNQIYAKNSLKGHMSTHSMETQHECAICNKSFSTKWNLKIHSWVHANRTAKPYKCDMCIKAFVREIDYKNHINAHKQIKPFTCEYCGCKFIRKYNYLRHRREHHGQKKFRCELCGKQFHRHYYLIEHRRTHTGERPFLCTICGKSSTTKTNHNKHLKIHHSRDPFTSET
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -