Vcin037776.1
Basic Information
- Insect
- Villa cingulata
- Gene Symbol
- -
- Assembly
- GCA_951394055.1
- Location
- OX596025.1:10517419-10519332[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 2.1 2.6e+02 3.6 0.2 1 23 50 73 50 73 0.93 2 13 3.9e-05 0.0048 18.5 1.4 3 23 194 215 193 215 0.97 3 13 3.3 4.1e+02 3.0 0.2 4 19 269 284 264 287 0.86 4 13 3.1e-05 0.0038 18.8 1.3 2 23 295 316 294 316 0.96 5 13 5.6e-05 0.0069 18.0 5.9 1 23 322 344 322 344 0.98 6 13 1.1 1.4e+02 4.5 2.0 1 23 349 371 349 371 0.96 7 13 0.089 11 7.9 0.2 6 23 382 399 377 399 0.91 8 13 2.5e-05 0.0031 19.1 4.2 1 23 405 427 405 427 0.98 9 13 0.22 27 6.7 1.0 1 23 432 454 432 454 0.95 10 13 7.1e-05 0.0088 17.7 2.4 5 23 463 481 461 481 0.96 11 13 0.00014 0.017 16.7 2.9 1 23 486 508 486 508 0.97 12 13 8.2e-07 0.0001 23.7 0.9 1 23 514 536 514 536 0.97 13 13 0.0029 0.36 12.6 1.7 1 23 542 564 542 564 0.95
Sequence Information
- Coding Sequence
- atGGACCTTGTATGTTTGAAAGAAGATTTCGTTGAGCATTTAAAATCTGAAGATGATTTTTCTACATTGGACAATATACTAGagaaaaattcAAGAAGTTCGCATAAATGTGGCGAGATTTTTATATCTGAAAAGGAAGTATTCAACTTTTTGTGTACACTATGTGAATCCCCATTCGAAGAAgtagataaattttttgttcatgTTAAAAGTATTCACAAAAGTACAAATAGACAGAAAGATTTAGACCCTCTAAAACAAAATGCAAATAATGAATATCAATGTGAATCTAGTATTGAACAAAATTCTATTGacaaattgaattcaaattctccaaaaaatgtatcaaatccGTATGATGAAGACATTTTGAAGGAAGAACCACTGTCAGAGAGCAGTGATgaagcaaacaaacaaagaagTAGTGAAAGTGCAAATGATACCGATGAAGATGAAGATAAAATATggtataaaactaaaaaaaatgcaCAGGAAACGAAGACGATTAAAAGATTccgaaaaaataatttgaatgaaCATAAATTAGAGTATTCAGCTGAAAAAAATACAGAACTGTTATGCGATATTTGCAGTAAAGGTTTTAAAACGCTTTACACTTTAAGAcgacatttgaaaaataatcaCAAAGTTGTTCTGGCTTCAAAGAATAATAATTCAACAGTAGAAACAGAGCCCCAGTCGCCGACAACTCCAGATTTGATCCAACCGAAGTCTACAGATTCAGAAAATATTgaagaagagaaaaataattctttGTACTCTGAAAAAATCTCACATCAGCGTAAACACTGTGACCgtcaatttaaagaaaaatcaatatTAGAAGAACATGAAACAATTTATTGTGGAGACAAACCAACTGAATGTAAAACTTGTGGTAAGCAATTTGCTACCAAAGCACGTTTacgaaaacatgaaaaaattcatACCAATATTAGAGAACACAAATGCCATGTTTGTCAATCTGCATTCAAGAATAAATCAAATCTATATTCTCATATGCTCAGGCACGGTGAAAAAAAGTATTCGTGCAATCACTGTGCATTGCAATTTTTTTTGGAATCTGAAAAGAAAATACATGAAAGACTTCATACTGGTGAGAAACCATTTATATGTATTGCTTGcggtaaacaattttttacaaaagcACGTTTAGAAACACATGAAATAATTCATACCAACAATAGAGAACATAAATGCGATATTTGTCAATCTACATTCAAGTATAAATCAAGTCTAAATTCTCATATGCTCAGGCACGGTGAAAAAAAGTATTCGTGCAATCAATGTGCATTGAAATTTTTCAGAGAATCTGAAAAGAGGGATCATGAAACAGTTCATACTGATGAGAGACCATTTGTATGTAATTGTGGAAAGTGTTTTAAAACACAGGGCACTTTGAATAAGCATGTGAAATCACATGGATCAAGACCACATAAATGTCAATATTGTGACAAAGGTTTTCTCACAAAAACTGATCTCAAGAAACATATTGTAATGCATACACGTGAAAAACCATTTGTATGTTCAATATGTGGAAAAACGTTTTCGCGACTAAAATCATTAAGATCACATGAACAACTTCATTCTGATTTGAAaggatatgtatgtaaaatttgtgGTGAAGGTTTTAACCAATATTCTGGACTTTACTGCCATAAGAAAATTCATGGACCTTTTAAGAAATTAAATTCTGTTGCAATTGAGAATTCCAAATAA
- Protein Sequence
- MDLVCLKEDFVEHLKSEDDFSTLDNILEKNSRSSHKCGEIFISEKEVFNFLCTLCESPFEEVDKFFVHVKSIHKSTNRQKDLDPLKQNANNEYQCESSIEQNSIDKLNSNSPKNVSNPYDEDILKEEPLSESSDEANKQRSSESANDTDEDEDKIWYKTKKNAQETKTIKRFRKNNLNEHKLEYSAEKNTELLCDICSKGFKTLYTLRRHLKNNHKVVLASKNNNSTVETEPQSPTTPDLIQPKSTDSENIEEEKNNSLYSEKISHQRKHCDRQFKEKSILEEHETIYCGDKPTECKTCGKQFATKARLRKHEKIHTNIREHKCHVCQSAFKNKSNLYSHMLRHGEKKYSCNHCALQFFLESEKKIHERLHTGEKPFICIACGKQFFTKARLETHEIIHTNNREHKCDICQSTFKYKSSLNSHMLRHGEKKYSCNQCALKFFRESEKRDHETVHTDERPFVCNCGKCFKTQGTLNKHVKSHGSRPHKCQYCDKGFLTKTDLKKHIVMHTREKPFVCSICGKTFSRLKSLRSHEQLHSDLKGYVCKICGEGFNQYSGLYCHKKIHGPFKKLNSVAIENSK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01519608;
- 90% Identity
- -
- 80% Identity
- -