Vcin037163.1
Basic Information
- Insect
- Villa cingulata
- Gene Symbol
- -
- Assembly
- GCA_951394055.1
- Location
- OX596025.1:2633719-2635127[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 2.8 3.4e+02 3.2 1.8 5 21 60 76 56 79 0.92 2 10 5.7e-05 0.007 18.0 3.3 3 23 166 187 165 187 0.97 3 10 7.5e-05 0.0093 17.6 0.3 2 23 227 248 226 248 0.97 4 10 0.00071 0.088 14.5 4.8 2 23 255 276 254 276 0.96 5 10 1.3e-05 0.0016 20.0 1.5 1 23 282 304 282 304 0.97 6 10 0.11 14 7.6 1.9 2 23 310 331 309 331 0.97 7 10 1.3e-05 0.0017 19.9 6.8 1 23 337 359 337 359 0.99 8 10 5.4e-07 6.6e-05 24.3 1.2 1 23 365 387 365 387 0.97 9 10 0.0004 0.049 15.3 1.9 1 23 393 415 393 415 0.98 10 10 9.2e-07 0.00011 23.6 1.1 1 23 421 443 421 443 0.99
Sequence Information
- Coding Sequence
- atggatatcataaatttaaagcaggaagaatttatagaaaaacaatttactaatttaaatattatattaaaaccTGATCCTGGTGAAGTGGGTGAACGTGAACATATGAACAAGTTACAGAAAAAGTGTGGAGAAATCTACATATGTGAAAAagatgttttcaatattttgtgcATATTTTGTGAAACTTCTTTTGAAGAGGCACAACATTTTTTCACTCATATTAGATGTGATCACGAGGAAGGAGAAACTTGTATTGTTAAAGTGACTGAGAGTGATCCTTTGGATATACGAAGTGACAACGGTAATCAAGAAGAAGTGAAGCCaacaattaatgaaaaaattaaatgtgaaaATGTAGTCTTTCCGGAAATTAATGCATTCGATGAGAATAGAATACAAAATTCAGTTGAAAATATATTGATAGGGGACAACTTTGAAAATGATTTAGAAACAAAAAAGGATTctgaagtaaaaaataaaaatacagaatTTTGCAATGTTTGTTACAAAACGTTCAGTTCGAAAAGAGCTTTTCAGCGACATAAAAGGCGTGAACACccgaaaaagaaaacaaagtcaAAAGCACAATCTCTAGTCGAAACTGATGAAAAAAATGGTGGTGAACAAAGTAAGGAATACGAAAAATCTTTAGAATCCGAAATTGATGACcctttaaaatgtaaatattgtgGTCGTCGTTTAGCAGACAACTTTACTTTAATAGAACACGTGAGAATTCATACAGGAGAAAGACCATGTCAGTGTCAAATTTGTGGTAAACAGTTTAGAACTGCAGGTTGTGTAAGACAACATGAAAAAAGACATAGTGATATTCGACAATACAAATGTGAAAAATGTGGAATGACATTCAAAAGTAAAGTAACACTTTATGCTCATTCACTCAGGCATggtgaaaagaaaatgaaatgcaatttttgtgaaaaattgttTCATTCAAAAGCTGAGAAAATAGAACATGAAAGAGTTCATACAGGCGAAAAAccatttaaatgtaatttttgtggTAAATGTTTCACAACTTGTGGTGGTTTACTTAGGCATACGAAAATGCACACTGGGATTACGCCGCACAAATGTCAGTATTGTGATAAAAGTTTTGTTACAAATGCTAGTCTAAATAATCATATCGTAGTACATATAGGCGAAAAGTCATTTTCATGCACTTCATGTAACGCctcattttttcgaaaaaatgatttgaaatctcatgaaaaaattcattcagATTACCGTGGATATGTTTGTAAAATTTGTGGAGAAGCATTTAAACAATATCCAACATTACATGCTCATATGAAAAAGCACAAAAAAGTCACAAATTAG
- Protein Sequence
- MDIINLKQEEFIEKQFTNLNIILKPDPGEVGEREHMNKLQKKCGEIYICEKDVFNILCIFCETSFEEAQHFFTHIRCDHEEGETCIVKVTESDPLDIRSDNGNQEEVKPTINEKIKCENVVFPEINAFDENRIQNSVENILIGDNFENDLETKKDSEVKNKNTEFCNVCYKTFSSKRAFQRHKRREHPKKKTKSKAQSLVETDEKNGGEQSKEYEKSLESEIDDPLKCKYCGRRLADNFTLIEHVRIHTGERPCQCQICGKQFRTAGCVRQHEKRHSDIRQYKCEKCGMTFKSKVTLYAHSLRHGEKKMKCNFCEKLFHSKAEKIEHERVHTGEKPFKCNFCGKCFTTCGGLLRHTKMHTGITPHKCQYCDKSFVTNASLNNHIVVHIGEKSFSCTSCNASFFRKNDLKSHEKIHSDYRGYVCKICGEAFKQYPTLHAHMKKHKKVTN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01519636;
- 90% Identity
- iTF_01519636;
- 80% Identity
- iTF_01519636;