Vcin038026.1
Basic Information
- Insect
- Villa cingulata
- Gene Symbol
- -
- Assembly
- GCA_951394055.1
- Location
- OX596025.1:14284183-14293309[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 21 0.0061 0.75 11.6 2.5 1 23 11 33 11 33 0.95 2 21 1.3e-05 0.0016 20.0 2.1 1 22 39 60 39 60 0.95 3 21 1.5e-05 0.0018 19.8 2.3 1 23 67 90 67 90 0.96 4 21 0.00027 0.034 15.8 2.7 1 23 95 117 95 117 0.98 5 21 0.0041 0.51 12.1 0.1 6 23 137 154 132 154 0.89 6 21 8.1 1e+03 1.7 0.3 1 11 202 212 202 214 0.91 7 21 0.00012 0.014 17.0 0.7 3 23 465 486 464 486 0.95 8 21 0.00027 0.034 15.8 2.7 1 23 491 513 491 513 0.98 9 21 0.011 1.4 10.7 0.1 6 23 533 551 528 551 0.87 10 21 0.023 2.8 9.8 4.9 1 20 558 577 558 579 0.93 11 21 0.014 1.8 10.4 0.3 1 23 591 614 591 614 0.95 12 21 0.19 24 6.9 1.9 3 20 623 640 622 642 0.93 13 21 0.025 3.1 9.6 3.6 1 23 905 927 905 927 0.97 14 21 0.69 86 5.1 4.5 1 11 933 943 933 957 0.80 15 21 0.0098 1.2 10.9 5.8 1 20 964 983 964 986 0.95 16 21 0.0034 0.42 12.4 0.9 1 22 992 1013 992 1013 0.93 17 21 6.8e-05 0.0084 17.7 1.5 1 23 1020 1043 1020 1043 0.96 18 21 0.00027 0.034 15.8 2.7 1 23 1048 1070 1048 1070 0.98 19 21 0.044 5.4 8.9 0.1 6 23 1090 1107 1085 1107 0.89 20 21 0.055 6.7 8.6 1.2 2 23 1167 1189 1166 1189 0.94 21 21 0.0011 0.13 14.0 3.8 1 23 1194 1217 1194 1217 0.97
Sequence Information
- Coding Sequence
- ATGAAAGATCATCAAGGAATACCACGTCCTTACTCGTGTGAATTATGTCCCAAAAGTTATCATAGTAAAAGAGATTTTCAATTACATTTGGGATATCATACAAATGAAAAACCTTTTGTATGTGAGATTTGCGgTAAACGAtatagaagtaaaaaaaatttaaaactacatttatgtaccaATTCAACTAATCTTAATTATAAATGTGATATGTGTAATAAAGCATTTCGCACCAGATCTACAATGCGAACACACAGGAAAGAAATCCATCTACCAAAGCCTTTCAgttgtaaaatttgtaataaagaGTTTGGCCGAAAATGTTACTATGAGgCGCATATAATAAGACATCGTCGTTTAGAAGATAAAGTATCTGAAAAGAATGAAGGACCATTCGTGTGCATAGCATGTGGTAAAGAATTTAACGATAATGATGCACTAAAAGCACATGAATCAAGTCATCTTCCAAAAAAACGATGTTTTAGTTGTATAATATGTGGAAAGACGTTAAGTAGTAAATTAACGCATCAGAAACATACTCTGTATTGTGGAAAAGTTAAAGCAGAAGCTGAATATCTATCTGAAAATCTATCTGAATATCTATACGAATGCAAGACATGtgAAATCAACTTTAAGGTTTTAGAAATTCCAAATTATCCTGGAATTTGTACAATATGTGAACAGaagttaaattatttatatacttttaaacaAAAAGCAGTTAACTCTCATTACGAACTTCTTGGATTTATATCGAAAAAGAATgatgaaacaaaaagaaaatttgagaGTTTTAGTGACTTTGATGATTTAGAAAATATTGAAGACGACAATGATACTTTGGTCTTAGAAACAATGAGTGAAGTCATTACAGAATCCGATGATGAGGTCTTACATAATTCAATTACAAAAGAAAAGGGAAAAAAAGATGAAACCGATCATTTTCTACTGGAAATGTCCGTAGACGATAATAGAGATTTTCCGACAGAAAAATGTTCGAACGTGAATCAGAATGCAGAAGAAGCTTTGTCATCGACAATGTTTAATGACAATTTTGATGTGGATAGTGATTGCGAAATTAATGGTGATGAttctaattcaaaaatattaaaccAACTGACCGAAAATGAAGAACGCGAAACTATTAACGAATtagaatttaatgaaaaaaccCCAAAATCATCTGAAGATATTCAAATAAATGGATCAATATTAAGAAGATTATTGGAACAAAAGAAAACACCTTCGAAAAACTCATTAAAGTCTACTGATGATATATCACAAATCCATTGTGATGAAGAGCTTCCAGAAAATTTACCACGGAAGATGACTAGAGGATGGAGAtctaaaattttcgaaaaatcaCTAAAGAAGATTCTGGACGAgagaatATGTGATATATGTAATAAAGCTTTTCGCACCAATGATACAATGCGAACACACAGGAAAGAAATCCATCTACCAAAGCCTTTCAgttgtaaaatttgtaataaagaGTTTGGCCGAAAATGTTACTATGAGgCGCATATAATAAGACATCGTCGTTTAGAAGATAAAGTATCTAAAAAGAATGAAGGACCATTCGTGTGCATAGCATGTGGCAAAGAATTTAACGATAATGATGCACTAAAAATACATGAATCAAAAACTCATCTGCCAAGTAATATATGTTTTAGTTGCAAAGGATGTGGAAAAACGTTCACTAAAATTAGATGTTATCAGaATCATACTTCACATTGTGGAATTGATAAAGAAGGAACTGATTATTTATACGAATGCAAGACATGTGAAAAATGGTTTAACGATTATGATGCACTAAAAGAACATGAATCAAGACCTCATCCGTCAAAAAGATCACGTTCGTTTTGTAAACATTGTGGAGAATctttaaatgataaattaagTTATAAGaaacattttctaaattgtaaaattgttaAAGAAAAAACTATTGTTAAAGAAAAAACTGAATATCTATCTGAAGATTTATCTGAAAATCTATCTGAATATCTATACGAATGCAAGACATGtgTTAACTCTCATTACGAACTTCTTGGATTTATATCGAAAAAGAAGgatgaaacaaaaagaaaatctgAGAGTTTTAGTGACTTTGATGATTTAGAAAATATTGAAGACGACAATGATACTTTGGTCTTAGAAACAATGAGTGAAGTCATTACAGAATCCGATGATGAGGTCTTACATAATTCAATTACAAAAGAAAAGGGAAAAAAAGATGAAACCGATCATTTTCTACTGGAAATGTCCGTAGACGATAATAGAGATTTTCCGACAGAAAAATGTTCGAACGTGAATCAGAATGCAGAAGAAGCTTTGTCATCGACAATGTTTAATGACAATTTTGATGTGGATAGTGATTGCGAAATTAATGGTGATGAttctaattcaaaaatattaaaccAACTGACCGAAAATGAAGAACGCGAAACTATTAACGAATtagaatttaatgaaaaaaccCCAAAATCATCTGAAGATATTCAAATAAATGGATCAATATTAAGAAGATTATTGGAACAAAAGAAAACACCTTCGAAAAACTCATTAAAGTCTACTGATGATATATCACAAATCCATTGTGATGAAGAGCTTCCAGAAAATTTACCACGGAAGATGACTAGAGGATGGAGAtctaaaattttcgaaaaatcaCTAAAGAAGATTCTGGACGAgagaatAATTGAGACCTACAATTGCGATATTTGTGTTCACAAATTTCATTCTAAACAAATGTTTGAGGCGCACATGAATGAACACAAAGGACTTCCAGCATTTCAATGTAACATATGTggaaaaacatataaatttgaCTGCAGAAGGTATTACAATGATCATATGAAAGATCATCAAGGAATACCACGTCCTTACTCGTGTGAATTATGTCCCAAAACTTTtcataataaaagtaaatttcagTCACATTTGGAAtgtcataaaaatgaaaaacattttgtatGTGAGATTTGCGgTAAACGATatagaagtaaaaaaattttagaactacatttatgtaccaACTCAACTAATCTTAATTATAAATGTGATATGTGTAATAAAGCATTTCGCACCATATCTACAATGCGAACACACAGGAAAGAAATCCATCTACCAAAGCCTTTCAgttgtaaaatttgtaataaagaGTTTGGCCGAAAATGTTACTATGAGgCGCATATAATAAGACATCGTCGTTTAGAAGATAAAGTATCTGAAAAGAATGAAGGACCATTCGTGTGCATAGCATGTGGCAAAGAATTTAACGAATATGATGAACTAAAAGCACATGAATCAAGTCATCTTCCAAAAAAACGATGTTTTAGTTGTATAATATGTGGAAAGACGTTAAGTAGTAAATTAACGCATCAGAAACATACTCTGTATTGTGGAAAAGTTAAAGCAGAAGCTGAATATCTATCTGAAAATCTATCTGAATATCTATACGAATGCAAGACATGtgAAAAGAGTCATAATTTGGAGTGTGACATATGTCGCAAAACTTATAGCGCCATGCATTCACTATACACACATTTTAGAGAAATTCATCAACCAAAACGTTTCAGTTGTGATAAGTGTAACATGAAATTTGGTAGAAAATTCTACTATCagATTCACATGAAGAAAAATCATACACATGAAGAATTCGAGACATCAGATCACGTCGAAAAAACCCAGAAAGCCTTAACATAA
- Protein Sequence
- MKDHQGIPRPYSCELCPKSYHSKRDFQLHLGYHTNEKPFVCEICGKRYRSKKNLKLHLCTNSTNLNYKCDMCNKAFRTRSTMRTHRKEIHLPKPFSCKICNKEFGRKCYYEAHIIRHRRLEDKVSEKNEGPFVCIACGKEFNDNDALKAHESSHLPKKRCFSCIICGKTLSSKLTHQKHTLYCGKVKAEAEYLSENLSEYLYECKTCEINFKVLEIPNYPGICTICEQKLNYLYTFKQKAVNSHYELLGFISKKNDETKRKFESFSDFDDLENIEDDNDTLVLETMSEVITESDDEVLHNSITKEKGKKDETDHFLLEMSVDDNRDFPTEKCSNVNQNAEEALSSTMFNDNFDVDSDCEINGDDSNSKILNQLTENEERETINELEFNEKTPKSSEDIQINGSILRRLLEQKKTPSKNSLKSTDDISQIHCDEELPENLPRKMTRGWRSKIFEKSLKKILDERICDICNKAFRTNDTMRTHRKEIHLPKPFSCKICNKEFGRKCYYEAHIIRHRRLEDKVSKKNEGPFVCIACGKEFNDNDALKIHESKTHLPSNICFSCKGCGKTFTKIRCYQNHTSHCGIDKEGTDYLYECKTCEKWFNDYDALKEHESRPHPSKRSRSFCKHCGESLNDKLSYKKHFLNCKIVKEKTIVKEKTEYLSEDLSENLSEYLYECKTCVNSHYELLGFISKKKDETKRKSESFSDFDDLENIEDDNDTLVLETMSEVITESDDEVLHNSITKEKGKKDETDHFLLEMSVDDNRDFPTEKCSNVNQNAEEALSSTMFNDNFDVDSDCEINGDDSNSKILNQLTENEERETINELEFNEKTPKSSEDIQINGSILRRLLEQKKTPSKNSLKSTDDISQIHCDEELPENLPRKMTRGWRSKIFEKSLKKILDERIIETYNCDICVHKFHSKQMFEAHMNEHKGLPAFQCNICGKTYKFDCRRYYNDHMKDHQGIPRPYSCELCPKTFHNKSKFQSHLECHKNEKHFVCEICGKRYRSKKILELHLCTNSTNLNYKCDMCNKAFRTISTMRTHRKEIHLPKPFSCKICNKEFGRKCYYEAHIIRHRRLEDKVSEKNEGPFVCIACGKEFNEYDELKAHESSHLPKKRCFSCIICGKTLSSKLTHQKHTLYCGKVKAEAEYLSENLSEYLYECKTCEKSHNLECDICRKTYSAMHSLYTHFREIHQPKRFSCDKCNMKFGRKFYYQIHMKKNHTHEEFETSDHVEKTQKALT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -