Basic Information

Insect: Villa cingulata
Gene Symbol: salm
Assembly: GCA_951394055.1
Location: OX596018.1:32037315-32051338[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 1.6e-06 0.0002 22.8 1.0 1 23 391 413 391 413 0.98

2 9 6e-06 0.00074 21.0 1.0 1 23 419 441 419 441 0.98

3 9 0.47 59 5.6 2.8 2 23 658 679 657 679 0.97

4 9 1.8e-07 2.2e-05 25.8 0.1 1 23 685 707 685 707 0.98

5 9 0.00015 0.019 16.6 1.4 1 23 717 739 717 739 0.99

6 9 0.039 4.9 9.0 2.2 2 23 943 964 942 964 0.97

7 9 1.2e-06 0.00015 23.2 2.1 1 23 970 992 970 992 0.98

8 9 7.3e-06 0.0009 20.8 3.1 1 23 1179 1201 1179 1201 0.98

9 9 1.1e-07 1.4e-05 26.5 1.4 1 23 1207 1229 1207 1229 0.99

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	1.6e-06	0.0002	22.8	1.0	1	23	391	413	391	413	0.98
2	9	6e-06	0.00074	21.0	1.0	1	23	419	441	419	441	0.98
3	9	0.47	59	5.6	2.8	2	23	658	679	657	679	0.97
4	9	1.8e-07	2.2e-05	25.8	0.1	1	23	685	707	685	707	0.98
5	9	0.00015	0.019	16.6	1.4	1	23	717	739	717	739	0.99
6	9	0.039	4.9	9.0	2.2	2	23	943	964	942	964	0.97
7	9	1.2e-06	0.00015	23.2	2.1	1	23	970	992	970	992	0.98
8	9	7.3e-06	0.0009	20.8	3.1	1	23	1179	1201	1179	1201	0.98
9	9	1.1e-07	1.4e-05	26.5	1.4	1	23	1207	1229	1207	1229	0.99

Sequence Information

Coding Sequence: ATGCCGTCAAATAATAACATGTGCTCCGAATTGCAAATGAATATTagaaatgatgataatttacAAGATGAAAAAACTGATGTTAAGCACGTGGTATCGTTTAACagaattataaaagaaaattctgaGGAACAAGAGCGGAAGTATCAAGAGCAGAGAAAACAACAGCAAGAAAAACAAGAAACGTCTATCCTACTAAACACAGCTGATAAAAATAACAGTAATGATTATAATAGCAGCGACAATACTCGTGGATTTGAAGCAAAAGATGACGAGTATGAAAATATACAGCATAataatgatggtgatgataaCGACAGTAAAGTATCTTTCGACAGTAGTTGTGCTCTTGATTTGTCTGTTGTACCATCACGAGCATCACAAATTTCAACTTCGGCATCATCACCACTACCACCCCCTCCAGGTCATGTTACACTAGAGGCCTTGCAAAATACTAAAGTTGCTGTAGCACAATTCGCAGCAACTGCAATTGCTAGCAGCAAAAATTACGAAGAAACTATTAAAGAGTTGACTGTAGTGCAATCgacatttttcaatttacatCATCAACAGATGTTACAAATGCAACTGATCCACGAACTACAGTCAAGATTGGTGAAcaacaaaacagaaaacaaaaaattagtcgacgaaaaaaaagaatcaaTCAATGAAAACTTCACAAATccagaaaataatgaaaagcaggaaagtgaaataaaaaatgaagaaaaaagtgAAAACAAATCAATTGAAAATTGTTCGAAAAATATTATCAGTgatcaaaaaccaaaaattatagAACATGAAGATTTAATTTCTGAAAAGAAAGATTCTAAGAAAAACATTCCAACTAGATTGAGTTTTCCTCAGCCACTCTCAGAATCCAATAATAAACAATCTGGCAATGAGAGCACTGATTATTTGTCCACTAAATCACTCATGTGTGATATAAGTTCGGCTCTTGCATCTAGTATCATAACGAATCATGACCCTTTACCACCTCCAGATGAACCAAATTCTTTGGAAATGCTGCAGAAAAGAACTCAAGAAGTATTGGATTCAGCTTCCCAAGGTATATTAGCAACAAATTTAGCTGATGAAATTGCATTAAGGAGTAAAGACAATCAATCACAAGATGGAAAAGGTAAAAATGATCAATTTTTTAAACATCGATGTAAATATTGCGGAAAGGTTTTTGGATCAGACTCAGCACTGCAAATACATATCAGATCACATACTGGCGAACGACCATTCGAATGTGATGTATGTGGCAGTAAATTTACGACTAAAGGTAATTTGAAAGTCCACTATCAACGACATACCCAGCGATATCCATGCGGACCAATGATGGGTCCCGGGGTATCTGATCTTTTAGACAACTACAATTTTGTAGCACTACCACCGTCATTACATCCACCAGATCCGATACCTGCAATATATCGACCAATGACCGAACGACCAACTGAATCACATCCTACAATCTTCAATTCCTTTACAACTTCTACAGCGAGACACTTAGATGGTGAAACACCGAAATCTCcaggaaaaataaatattgattttGATCAGGAAGAGCCTACTGATTTAAGTAAACCatcaaaaaatatagaattttcTGAATTAAAAGACCCTAACTCTAAGGCCGAAATTCAACAGAATCtccaaaattcttttttaattaaccCTGCAAATGATTCTCCAAAagaattaatcaaaaattttcaagaatcaCAAGAAAGTTTTTCGAGAAAAAAGCTCTCGTCATCGTTTTCGTCTTCATCCAGTGAAAATTCATACTTGTCATCTTTGGATGTGCATTCCGAACTGCCGTCTATTGCAAGTATGATTTCGAATGCGACACAAAATGATAATTCTTGGGAAAACTTAATAGAGATCGCAAAGCCCTCAGAAACTTCAAAACTTCAACAGTTAGTCGACAACATTGAGAATAAGCTTGCAGATCCGAATCAATGCGTTTTCTgtcaaaaaatattatcatgTAGAAGTGCACTTCAAATGCATTACCGAACGCATACTGGAGAAAGGCCTTTTAGATGTAGAATATGCGGTAGAGCGTTTGCAACAAAAGGTAATCTTAAAGCACATATGATAATCCACAAAATCAAACCTCCGATACGAAGTCAGTTTAAATGCCCGGTGTGTcacaataaattttctaatggTGTTATGCTTCAAGAACATATCAAAACACATACAATAGAAGCCGGAGTTGATGATTTTCGAAAGACTAGATCGATGTCGCAAGGAGGAGAAAATTCCttcgaaaataaaaactttCAATCATTAATGAATAAAGCTGTAGGATCTTCAAATTCTGAAAGTTCTGAACAAAAATCTGAATCATCCTCTGATGActttgttgatgatgatgacgataatttCATGgaaattgatgatgatgatgatgatgatgataataagaATACAGTGAATGAATTTCGAAACGAAAATGATGTGGAAAATTCACTGAATCTAGAAAAGCCGTACAAATCAATACAAGATATCTCAGAGAATTCTAAATTCACATCGAAATCAATAAATAACATTAATGTTAATGGCGCTTTAGATCTTACACCCAGAACAAAAATTGATACAATTTGTACTGAAAAAACTTCGCTGGCTTCACTTGACGGCATAAATAAATTTCGACCGTTTACATCGTTTCCGCCTGGGGGGTGTATCGAAAATTCtccattgaatattttttcgaaTACAATACCATCGATGGCATCACATCCGTCATTAATGTCAAAATTCTCAACACTCAATCCATTCAGTATCGGAGGTATTCGAGGTAGTACAACATGCAACATATGTTACAAAACATTTGCTTGTACATCAGCATTGGAGATACATTTTCGTAGTCATACCAAAGAACGTCCCTTTAAATGTTCGGTCTGTGATAGAGCTTTCTCGACAAAGGGCAATTTAAAACAACATTACTTCACTCATAAACATTGCGAGGCGTCAACACATAATTTCTGCACATCCAGTCAATCCGAAGATGAATCTACGTGTACATCTTCTCAATATCCAGTCTCACAAAAACTTCAGTCTACAGTACATGAAAATTCTCCAGCAACACCAACTTCATTACCACCAGCGTCATCTTCATCTATGACAACTCAGAAACTGTCTTCCAAAAACGAATTCCATCCGAGAGAATATTCTTTATCGCCAAAATCACCAATAGACTTGTTAGATGATGATTCCAAAGATGTAGAAGACCAACAAAGACTGAAATCCATTACCACTATTACCAGTATTACTACCACTAATAGTACTGCATATGACATGGAACAATTATTCCCTAAACTCCATTTTCAAAACTCCGTTAACATGCCATCAGAAATTCTAGATCCAACTATTGGTGTTACAAATACACGTTCTACTCAATCCAGTGGATCAACTGAAACAGAATCAATGAACTCCTTACAAAatctttatttaaaagaaattccACGTCCAGAGAGTTATTCTCCGATTAATTCTAATTCAGACAATATAAAGCATTATTGTACGGTTTGTAGGAAAAATTTTAGTTCGACTTCTGCTTTACAAATTCACATGAGGACTCATACCGGTGATAAACCATTTCGGTGTACAGTCTGCCAAAAAGCATTTACAACAAAAGGAAATTTAAAGGTTCATATGAGTACTCATATGTGGACGAATGGTGCATCAAGACGAGGTCGTAGAATGTCACTGGAATTTCCATTGCGAAGATCACCTCTTAGCAATCATTATCCGTCTGCTGAAAATGAATATCTGCAAAGGAGATCGGATATATTTTATCCATATATATCTCCTGTCATCAATGGAATACAGCGTAAGTTTAATGAATTCAGACCAATACAACCTGGCAGTTATAGTAATTTGTCATCAATCCCACCAAATAATTCAACTACAATGTCTGGAAAGTATTCGGGTCTTTTCGGGTTTAGTCCATTTTTATCGAATCAATCAGGAATACATCATTATCAACATCAGATTTTATCAGGATCATCAGAATCAACTACTAATATAAGTCATCAAAgcgaaaatcaaaaattattgcataaaggagaaaaattaaatttttggaaatcaaatttcatgtatgaaaataattttgatggAAATATGGAAAGTTTAAGTAATCAAGTAGAATTTGGCACAACAAATGACCAAAGTCTAAAAGTATGa
Protein Sequence: MPSNNNMCSELQMNIRNDDNLQDEKTDVKHVVSFNRIIKENSEEQERKYQEQRKQQQEKQETSILLNTADKNNSNDYNSSDNTRGFEAKDDEYENIQHNNDGDDNDSKVSFDSSCALDLSVVPSRASQISTSASSPLPPPPGHVTLEALQNTKVAVAQFAATAIASSKNYEETIKELTVVQSTFFNLHHQQMLQMQLIHELQSRLVNNKTENKKLVDEKKESINENFTNPENNEKQESEIKNEEKSENKSIENCSKNIISDQKPKIIEHEDLISEKKDSKKNIPTRLSFPQPLSESNNKQSGNESTDYLSTKSLMCDISSALASSIITNHDPLPPPDEPNSLEMLQKRTQEVLDSASQGILATNLADEIALRSKDNQSQDGKGKNDQFFKHRCKYCGKVFGSDSALQIHIRSHTGERPFECDVCGSKFTTKGNLKVHYQRHTQRYPCGPMMGPGVSDLLDNYNFVALPPSLHPPDPIPAIYRPMTERPTESHPTIFNSFTTSTARHLDGETPKSPGKINIDFDQEEPTDLSKPSKNIEFSELKDPNSKAEIQQNLQNSFLINPANDSPKELIKNFQESQESFSRKKLSSSFSSSSSENSYLSSLDVHSELPSIASMISNATQNDNSWENLIEIAKPSETSKLQQLVDNIENKLADPNQCVFCQKILSCRSALQMHYRTHTGERPFRCRICGRAFATKGNLKAHMIIHKIKPPIRSQFKCPVCHNKFSNGVMLQEHIKTHTIEAGVDDFRKTRSMSQGGENSFENKNFQSLMNKAVGSSNSESSEQKSESSSDDFVDDDDDNFMEIDDDDDDDDNKNTVNEFRNENDVENSLNLEKPYKSIQDISENSKFTSKSINNINVNGALDLTPRTKIDTICTEKTSLASLDGINKFRPFTSFPPGGCIENSPLNIFSNTIPSMASHPSLMSKFSTLNPFSIGGIRGSTTCNICYKTFACTSALEIHFRSHTKERPFKCSVCDRAFSTKGNLKQHYFTHKHCEASTHNFCTSSQSEDESTCTSSQYPVSQKLQSTVHENSPATPTSLPPASSSSMTTQKLSSKNEFHPREYSLSPKSPIDLLDDDSKDVEDQQRLKSITTITSITTTNSTAYDMEQLFPKLHFQNSVNMPSEILDPTIGVTNTRSTQSSGSTETESMNSLQNLYLKEIPRPESYSPINSNSDNIKHYCTVCRKNFSSTSALQIHMRTHTGDKPFRCTVCQKAFTTKGNLKVHMSTHMWTNGASRRGRRMSLEFPLRRSPLSNHYPSAENEYLQRRSDIFYPYISPVINGIQRKFNEFRPIQPGSYSNLSSIPPNNSTTMSGKYSGLFGFSPFLSNQSGIHHYQHQILSGSSESTTNISHQSENQKLLHKGEKLNFWKSNFMYENNFDGNMESLSNQVEFGTTNDQSLKV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -