Basic Information

Insect: Villa cingulata
Gene Symbol: -
Assembly: GCA_951394055.1
Location: OX596025.1:14968441-14971652[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 13 0.26 33 6.4 0.8 1 18 152 169 152 169 0.92

2 13 5.2 6.5e+02 2.3 3.7 2 23 181 202 180 206 0.81

3 13 0.21 26 6.7 4.4 1 20 220 239 220 241 0.94

4 13 3.3e-05 0.0041 18.7 7.8 1 23 431 453 431 453 0.98

5 13 0.00044 0.054 15.2 1.8 1 23 459 481 459 481 0.95

6 13 1.7e-05 0.0021 19.6 1.0 1 23 487 510 487 510 0.97

7 13 0.37 46 6.0 2.6 3 23 522 541 521 541 0.96

8 13 0.00014 0.017 16.7 0.3 2 23 547 568 546 568 0.96

9 13 3.3e-06 0.00041 21.8 0.4 1 23 574 596 574 596 0.96

10 13 5.4e-06 0.00067 21.2 0.8 1 23 602 624 602 624 0.98

11 13 9.1e-06 0.0011 20.5 0.8 3 23 632 652 630 652 0.96

12 13 1.2e-06 0.00014 23.3 0.8 1 23 658 680 658 680 0.99

13 13 0.00018 0.022 16.4 0.7 1 23 685 708 685 708 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	13	0.26	33	6.4	0.8	1	18	152	169	152	169	0.92
2	13	5.2	6.5e+02	2.3	3.7	2	23	181	202	180	206	0.81
3	13	0.21	26	6.7	4.4	1	20	220	239	220	241	0.94
4	13	3.3e-05	0.0041	18.7	7.8	1	23	431	453	431	453	0.98
5	13	0.00044	0.054	15.2	1.8	1	23	459	481	459	481	0.95
6	13	1.7e-05	0.0021	19.6	1.0	1	23	487	510	487	510	0.97
7	13	0.37	46	6.0	2.6	3	23	522	541	521	541	0.96
8	13	0.00014	0.017	16.7	0.3	2	23	547	568	546	568	0.96
9	13	3.3e-06	0.00041	21.8	0.4	1	23	574	596	574	596	0.96
10	13	5.4e-06	0.00067	21.2	0.8	1	23	602	624	602	624	0.98
11	13	9.1e-06	0.0011	20.5	0.8	3	23	632	652	630	652	0.96
12	13	1.2e-06	0.00014	23.3	0.8	1	23	658	680	658	680	0.99
13	13	0.00018	0.022	16.4	0.7	1	23	685	708	685	708	0.96

Sequence Information

Coding Sequence: atggatGCTTTAAGTGGTGATCAAGATTTATGTAGAACTTGTTTACATTCTGTTGATGATGGATTAGTATCATTGTATCAAGATGGTGAAGAGGTATCAATATTTGATGGTATATCAATAGCACAAATGATAAATGAATGTTGTGTTCATCcaGTGAAAAAAGATGATCCATTCACAAAGAAGATTTGTATAAAATGCATTGATGATATAAAAATTGCATACAATTTTCGTAAACAAAGTGAAAATGcatttaaaactttaaaatcgTTCTTAATTGATGATAATTATAGCAAtcatgctgatgatgatgatgatggtgattatAAAACGGAGGATGTGAATGCATTCATTTTCAAACCAccattaatttatattgaaaatttaagaaGTAAAGACTTAGAAGAAAATTTACCACCAACAGAAAAATGTGTACAAACTGATGAAGTAGCATTTTATCCGTGTGAAAGATGTGACAAAAAATATTTCGACTATGACATGctgaaaaaaaatcatCAAACTGATCGAGAACGAAGTGCAAAAGAATGTAGCATTTGTTCACAAAAATGTGAAACAGATGAAATTCTGAAAAAACATTTGCAACAGCATTTGCAAAAGCATAATGAACATggaaaagaaaatgataaaaatattaaaatgttccattgtacattatgtacagaatcatttcaaaatgaaaataattacaaaaatcataaatgtggaaataaaaatgatagaaTCGATAATAATTCATCACTTCCAATTGCATTAATGGAACCGATTATGGAAACAGAACAAGTCGAAGaagaaatatatgaaaatgattttttagaTACGAATGATGATAATAACGAGAATTTTAATCaagatgataatgaaaatattgtagatGACGTCTTTGATAcgaatgatgataataatgattacAGTCATGATGATAATGAGAATATGAATAATTCCATTGTTAACAATGATGATGGTGGTACAATCACAGATGAAGATGATATAAAACCATTAGCTGAATTATttCGTAAAAGTCAAAATGATAAAACATCATCAattgaaacaaacaaaattaaatctAAAAGAAAACAAACGGCAAGACAAGAAATATCagcaaataaaaaatcaaaaaaagaaatatcagCATCAGcagatgaaaaattgaaaaaggaaaTAACAGCACCGGgagatgaaaaattaataaaaaaggaaatactagaattaaaaaaatcaaaaaaacaaaataaatcagAACCATCATTGgtaaaaattagagaaaaaaaagttCATCGTTGTGAGCAATGTAACAAACAATTTACACGTTCGACTCATTTGAGACGTCATACACTTACACATTCTGGTGAAAAACCATTTTCTTGTGATATCTGCCTTAAGCGTTTCACAAGAGTTGATCATTTAAATTTACACAAATTAGGTCATGCTGATATAAAACCATTCACATGTGATATTTGTAATCAGGGCTTTGTAAAATCTTATTATTTACGAAGACACATAGAATCACGTCATGGCAATAAATTGCCGAGTCCAAAGACTGAATTCTGTGAGACATGCAAACgttacttttcaaaaaaatatatgaaagttCATGTTAAGTCTCATTTAGAACGTCGATGGAGTTGTAAAAGTTGCGATGAAAGATTTGATGACAGATCAAAATTGGCAGAACACATAAAAATTCATGCAAACGAAAAACCATTTTTATGTTCAGAATGTGGTTTACGATTTGTCAGAAACGATTATCTAGTTATACATATGAGACGGCATAAAGGTGaaaaaccatataaatgtaaattttgtgaTAAAGGTTTTCCAAGAGCAACAGATTTAACAGTACATGAAAGatatcacACTGGTGAAAAATCGCATCTGTGTACAATTTGTGGTAAAGGCTTTCAACGTGCATATAATTTGTTGGTACATACGAGAATACATACCGGTGAACGTCCTTATCAATGTCCACAGTGTCCAAGATGTTTTGCTCAAGGAAACGATTTAAAGGCTCACATACGACGTCATACCGGCGAAAGATTCAAATGTGATATTTGTGGAAGTGGATTTATACAGGTCTATCATTTAACACAACATAAACGTGCTGCACATGGAATTGAAACACAATCACATATACGTCGAGTTGAAAAATTCATAACACCAACGGAACAACAAAAACAAGTCGAAGCATTACAAAGTAAATTGAATGAATCTAAATCTGTTATAAATTCAGATTCAACtactgaaacaaaaaatatagcATTAACAGAAATTACTGCGCAATCATCGAAACTAACGGCTCCCCCACAAACACAAATTTATGGTtttaaagaaatacaaaaaatcgGAGAAAACGATATGAAAGTTGTAACTAAACAGGaggaaattgaaattgaagaaCATCCTTTAGAAACCTTTTAG
Protein Sequence: MDALSGDQDLCRTCLHSVDDGLVSLYQDGEEVSIFDGISIAQMINECCVHPVKKDDPFTKKICIKCIDDIKIAYNFRKQSENAFKTLKSFLIDDNYSNHADDDDDGDYKTEDVNAFIFKPPLIYIENLRSKDLEENLPPTEKCVQTDEVAFYPCERCDKKYFDYDMLKKNHQTDRERSAKECSICSQKCETDEILKKHLQQHLQKHNEHGKENDKNIKMFHCTLCTESFQNENNYKNHKCGNKNDRIDNNSSLPIALMEPIMETEQVEEEIYENDFLDTNDDNNENFNQDDNENIVDDVFDTNDDNNDYSHDDNENMNNSIVNNDDGGTITDEDDIKPLAELFRKSQNDKTSSIETNKIKSKRKQTARQEISANKKSKKEISASADEKLKKEITAPGDEKLIKKEILELKKSKKQNKSEPSLVKIREKKVHRCEQCNKQFTRSTHLRRHTLTHSGEKPFSCDICLKRFTRVDHLNLHKLGHADIKPFTCDICNQGFVKSYYLRRHIESRHGNKLPSPKTEFCETCKRYFSKKYMKVHVKSHLERRWSCKSCDERFDDRSKLAEHIKIHANEKPFLCSECGLRFVRNDYLVIHMRRHKGEKPYKCKFCDKGFPRATDLTVHERYHTGEKSHLCTICGKGFQRAYNLLVHTRIHTGERPYQCPQCPRCFAQGNDLKAHIRRHTGERFKCDICGSGFIQVYHLTQHKRAAHGIETQSHIRRVEKFITPTEQQKQVEALQSKLNESKSVINSDSTTETKNIALTEITAQSSKLTAPPQTQIYGFKEIQKIGENDMKVVTKQEEIEIEEHPLETF

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -