Vcin037777.1
Basic Information
- Insect
- Villa cingulata
- Gene Symbol
- -
- Assembly
- GCA_951394055.1
- Location
- OX596025.1:10521344-10523484[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 2.1 2.6e+02 3.6 0.2 1 23 50 73 50 73 0.93 2 13 2.8e-05 0.0035 18.9 1.0 3 23 201 222 200 222 0.97 3 13 0.11 14 7.6 0.4 4 19 276 291 271 294 0.92 4 13 1.9e-05 0.0023 19.5 0.6 2 23 302 323 301 323 0.95 5 13 0.0011 0.14 13.8 3.1 1 23 329 351 329 351 0.98 6 13 0.22 27 6.7 5.9 1 23 356 378 356 378 0.97 7 13 0.0063 0.78 11.5 0.3 6 23 389 406 384 406 0.91 8 13 6.6e-06 0.00082 20.9 1.7 1 23 412 434 412 434 0.98 9 13 0.00026 0.032 15.9 2.9 1 23 439 461 439 461 0.98 10 13 0.00014 0.018 16.7 4.0 5 23 470 488 468 488 0.96 11 13 1.6e-06 0.0002 22.8 3.5 1 23 494 516 494 516 0.98 12 13 9.7e-05 0.012 17.2 0.1 1 23 522 544 522 544 0.98 13 13 2.7e-05 0.0033 19.0 0.2 1 23 550 572 550 572 0.98
Sequence Information
- Coding Sequence
- atGGACTTTGTATGTTTGGAAGAAGATTTCGTTGAGCATTTAAAATCTGAAGATGATTTTTCTACATTGGACAATATACTAGatgAAAATTCAAGAAGTTCACATAAATGTGGCGAGATTTTTATATCTGACGAGGAAGTATTCAACTTTTTGTGTACACTATGTGAATCCCCATTCGAAGAAgtagataaattttttgttcatgTTAAAAGTATTCACAAAAGTACAAATGGACAGAAAGATTTAGACCCTCTAAAACAAAATGCAACTGAATATCAATGTGAACAAATTATATTCGAATCTCAATCTAGTATTGAACCGAATTCTATTGacaaattgaattcaaattctCCAGTAAATGCATTAAATCCGTATGATGAAGACATTTTGAAGGAAGAATTACTATCTAAGAGCAATGATGGAAAACACAAAAACAGTAGTAGTGAAAGTTTTAGTGATACAGataaagatgaaaatgaaacatggcataaaactaaaaaaattgcacagaaaacaaaaaagacgattaaaaaatttcgaaaaaataatttgaatgaaCATAAACTAGAGTATTCAGTTGAAAAAAATACAGAACTGTTATGTGATATATGCAGTAAAGGTTTTAAAACGCTTTACACTTTAAGAcgacatttgaaaaatattcacaaaGTTGTTTTGgcttcaaaaaataataattcaacagTAGAAACAGAGCCCCAGTCGCCGACAACTCCAGATTTGATCCAACCGAAGTCTACAGATTCAAAACATATTgaagaagataaaaataattctttgtACTCTGAAAAAATCTCACATCAGCGTAAACACTGTGACCgtcaatttaaagaaaattcaaaattagaaGAACATGAAACAATTGATTGTGGAGACAAACCAACTGAATGTCAAACTTGTGGTAAGCAATTTGCTACCAAAGCCAGTTTACAAAAACATGAAACTATTCATACCAATATTAGAGAACATAAATGTGATATTTGTCAATCCGCATTCAAGAATAAAAAAGTTCTGTATACTCATATGCTTAGACATGGTGAGAAGAAGTATTCGTGCCATCACTGTTCCATGAAGTTTTTCAGAGGATCTGAAAAGAAGGTGCATGAAAGACTTCATACTGGTGAGAAACCATTTATATGTATTGCTTGCGGTAaacaatttattacaaaatcacGTTTAAAAACACATGAAATAATTCATACCAACATTAGAGGACACAAATGCGATATTTGTCAATCTGCATTCAAGGATAAATCAGCTCTAAATACTCATATGCTTAGGCACGGTGAGAAAAAGTATTCGTGCAATCATTGTGGGAAGAGATTTGTTCTAAAATCTGAAAAGAGGGAACATGAAAGACTTCATACTACTCAGAGACCATTTGTATGTAATTGTGGGAAGTGTTTTAAAACACAATACCATTTGAATATACATTTGAAATTACATACGGGATCAAAACCACATAAATGTCAATATTGTGACAAAGATTTCCGCACAAAAACTGAACTCAAGAATCATATTATAATGCATACAGGTGAAAGACCATTTGTATGTTCAATATGTGAAGCAACGTTTCCGCGACTAAATGCATTAAGATCACATGTAAAAATTCATTCTGATTTGAAAGGATATGTCTGTGAAATTTGTGGTGCAGCTTATAAGCAATATTCTGGACTTAACAGCCATAAGAAAAGCCAtgaacacaataaaaaattaaattctgttGCAATGGAAGATTCTCAATAA
- Protein Sequence
- MDFVCLEEDFVEHLKSEDDFSTLDNILDENSRSSHKCGEIFISDEEVFNFLCTLCESPFEEVDKFFVHVKSIHKSTNGQKDLDPLKQNATEYQCEQIIFESQSSIEPNSIDKLNSNSPVNALNPYDEDILKEELLSKSNDGKHKNSSSESFSDTDKDENETWHKTKKIAQKTKKTIKKFRKNNLNEHKLEYSVEKNTELLCDICSKGFKTLYTLRRHLKNIHKVVLASKNNNSTVETEPQSPTTPDLIQPKSTDSKHIEEDKNNSLYSEKISHQRKHCDRQFKENSKLEEHETIDCGDKPTECQTCGKQFATKASLQKHETIHTNIREHKCDICQSAFKNKKVLYTHMLRHGEKKYSCHHCSMKFFRGSEKKVHERLHTGEKPFICIACGKQFITKSRLKTHEIIHTNIRGHKCDICQSAFKDKSALNTHMLRHGEKKYSCNHCGKRFVLKSEKREHERLHTTQRPFVCNCGKCFKTQYHLNIHLKLHTGSKPHKCQYCDKDFRTKTELKNHIIMHTGERPFVCSICEATFPRLNALRSHVKIHSDLKGYVCEICGAAYKQYSGLNSHKKSHEHNKKLNSVAMEDSQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -