Vcin007034.1
Basic Information
- Insect
- Villa cingulata
- Gene Symbol
- -
- Assembly
- GCA_951394055.1
- Location
- OX596017.1:46255945-46266608[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.051 6.3 8.7 2.5 2 23 290 312 289 312 0.97 2 13 3.4e-06 0.00042 21.8 4.1 1 23 344 366 344 366 0.98 3 13 0.0039 0.48 12.2 1.3 1 23 374 396 374 396 0.96 4 13 4.2e-07 5.2e-05 24.7 0.7 1 23 404 427 404 427 0.96 5 13 0.21 26 6.7 1.2 2 23 434 455 433 455 0.95 6 13 0.0013 0.17 13.6 3.3 2 23 464 485 463 485 0.98 7 13 1.3e-05 0.0016 19.9 0.2 1 23 492 515 492 515 0.97 8 13 2.6e-06 0.00032 22.2 0.4 1 23 521 543 521 543 0.99 9 13 2.1e-06 0.00027 22.4 4.3 1 23 549 572 549 572 0.98 10 13 0.09 11 7.9 0.3 2 23 686 707 685 707 0.96 11 13 0.067 8.4 8.3 0.7 1 23 714 737 714 737 0.93 12 13 2.7e-05 0.0033 19.0 0.3 1 23 742 764 742 764 0.98 13 13 6.3e-05 0.0078 17.8 3.2 1 23 770 793 770 793 0.98
Sequence Information
- Coding Sequence
- atgttaTGTAGATTATGTCTACTTGATTCAACTGAAGtacttaaaatatttgaaaatgatgGAGAACGATTTGAAATCGCCGATATAATAGCACAACATTTTTGGTTTTCGcCAACTAGAGATGATCcaatatcaaatttaatatGCTGCACATGTTGGTCTAAGGTTGataattttcatcaattttattcCTTTGTACAAGATGCACAGAAGAAATTATctgaaatttcaattattaaattagatccaacaacaacaacaataacaacaacagcagcaacacaACAGGCGAATAGTTcttttaaaaaagaagaagaatatgatGATCAATGGATGAATGATAGTGGTACTGCTGAATATGTAAACGTGATTGAGGAAAATATAACTGAAGacatacaaaactataaaattgaaaatgaatccAAAGAATCTGAAGAATTTGAATAtgactatgatgatgatgatgatgatgatgatgatgatgatgatgatgaagatgaagatgattCAAAACctgataaaaatgaagaaataaaagatCCTATAGATACAGATAATACAAATCAAAGTAACGAAGTAGATATAAAAGTAAAGGCAACAACAACTAGTAGTGATGATATTTCAAATACGTAtcctaaaaaaaaatcatctttatcaattaaatcaatgacagtaacaacaacaaaaactgGTGGTAAAAGGAAAAGAGGTCGTCCTAAAAAAAGACCACCAAATGCCAGCGATAGCGAAGAAGATTTACCTTTAACACATTTTGTTAAAccgaaaaaaagaaatagaaatgaACAATCTGAATGGTTGAAAAAATCCAAAGAAGATGatgaaaaaattgcaaaatacatgaaattaaaatgtgaaatttgttgTGAAGAATTTACAACATTTGCCCAAGTTAAACAACATTATAGAACAAGTcataataaaaaaggatatgtCGTttgttgtaataaaaaattatataaaagaattttattgTTGGATCATGTTAATAAACATATAAATCCAGATTATTTCAAaTGTGATGAatgtaacaaaatattttctgatAAACAATGTTTGAAAAATCACATGCTAAGACATGAATCAGatgaatcaaaaatttttcaatgtgatCAATGTCCCAGAAAATATGCGAAACAATATCTTTTGGATcaacataaatttattcatgTGCCACCAGAAGAAAGACAATTCATATGCGATGATTGTGGAAAAGCattttcaacaaaaaatttattacaaacacATCGTCGTTATGTACATCAAAATGCATATGGAAAAATGTGTCATGTATGTGCAAAAGTAATACGTGGTAGAACAATGTTTGAAAAACATCAATTAGAGCATGCTGGTATTGTTGAACCAAAAGTACAATGTAAAAAATGTGGTGCATGGTTAAAACATAAATATAGTTTAAGAAAGCATATGAGACGTCATATGGAATCATTAAGTACTCATAAATGTGAAATATGTGGAAAAGTAGCACCATCAAGAGGAGCATTAAGAAGTCATATGAGATATGTTCATGAGGCAGAGAGACAATATCAATGTGGTGTATGTGATAAAGCATTTAAAAAAGCGATAACATTaaaggAACATATGACAACACATACCGGTGAGGTATTATATACATGTCCACATTGTCCAAAAACGTTCAATTCAAGCGCAAATTTACATTCACATCGAAAGAAAGTACATAGAAAAGAATGGGAAGAATCAAGAAGAATTCGTGGTCTTCCTGCAAATCAAATAACATCAGATGTTAGATCTAGAATTCATAAAAATAGTGGAAATGAATTagtaattgaaaattcaaaagaagaagaagaaggagaagaagaagaattttatGATGAAGAAatcattgaaaataattcatacGAGATCCTAGAAGATGATGAAAAAGAAACTTCTCATCATCGTGAAAATGAGAATATAAATCATgaacaaaatcaatttttatttgtacttgatacaacagaaaatttaatttatcgtaaaTTAGAAGAGCATATGGGACAAAAATTTCCACCAAtacaatgtaaaatatgtaatgcaTGGCTAAAAAATAAACGTTCATTACGTGAACATTTGAATGGACATGAAGATCAAGGACAAATACATCGATGTGATATATGTGGTAAACAAGGTCCAACACGTAGATCGATTGCAGATCATAAAAGATTCGTtcataatgaaagaaaatttgtatgtacaatatgtaataAAGGATTTAAAAGGCCAATTGTATTAAAAGAACATTTAACAACGCATACTGGAGAGATATTATATAGATGTACATTTTGTCCAAAAGTATTTAATTCGAATGCAAATATGCATGCACATAGAAAGAAAAGTCATCCGACTGAATGGGCTGAAGATAAACAAAGGAAATCAAAATTGACAAATCTACAAAATTTCGATTAA
- Protein Sequence
- MLCRLCLLDSTEVLKIFENDGERFEIADIIAQHFWFSPTRDDPISNLICCTCWSKVDNFHQFYSFVQDAQKKLSEISIIKLDPTTTTITTTAATQQANSSFKKEEEYDDQWMNDSGTAEYVNVIEENITEDIQNYKIENESKESEEFEYDYDDDDDDDDDDDDDEDEDDSKPDKNEEIKDPIDTDNTNQSNEVDIKVKATTTSSDDISNTYPKKKSSLSIKSMTVTTTKTGGKRKRGRPKKRPPNASDSEEDLPLTHFVKPKKRNRNEQSEWLKKSKEDDEKIAKYMKLKCEICCEEFTTFAQVKQHYRTSHNKKGYVVCCNKKLYKRILLLDHVNKHINPDYFKCDECNKIFSDKQCLKNHMLRHESDESKIFQCDQCPRKYAKQYLLDQHKFIHVPPEERQFICDDCGKAFSTKNLLQTHRRYVHQNAYGKMCHVCAKVIRGRTMFEKHQLEHAGIVEPKVQCKKCGAWLKHKYSLRKHMRRHMESLSTHKCEICGKVAPSRGALRSHMRYVHEAERQYQCGVCDKAFKKAITLKEHMTTHTGEVLYTCPHCPKTFNSSANLHSHRKKVHRKEWEESRRIRGLPANQITSDVRSRIHKNSGNELVIENSKEEEEGEEEEFYDEEIIENNSYEILEDDEKETSHHRENENINHEQNQFLFVLDTTENLIYRKLEEHMGQKFPPIQCKICNAWLKNKRSLREHLNGHEDQGQIHRCDICGKQGPTRRSIADHKRFVHNERKFVCTICNKGFKRPIVLKEHLTTHTGEILYRCTFCPKVFNSNANMHAHRKKSHPTEWAEDKQRKSKLTNLQNFD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -