Vcin038735.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Villa cingulata
Gene Symbol
-
Assembly
GCA_951394055.1
Location
OX596025.1:27223251-27230066[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 14 0.00053 0.065 14.9 0.3 1 23 155 177 155 177 0.99
2 14 7.2e-05 0.009 17.6 3.1 1 23 183 205 183 205 0.98
3 14 0.00047 0.059 15.1 0.4 1 21 211 231 211 233 0.95
4 14 0.00012 0.014 17.0 3.1 1 23 239 261 239 261 0.97
5 14 0.0015 0.18 13.5 5.0 1 23 267 290 267 290 0.96
6 14 0.026 3.3 9.6 1.0 1 23 553 575 553 575 0.97
7 14 0.22 27 6.7 4.3 1 12 581 592 581 605 0.76
8 14 0.0001 0.013 17.2 1.8 1 23 612 634 612 634 0.99
9 14 5.6e-06 0.00069 21.1 1.5 1 23 640 662 640 662 0.98
10 14 4.4e-06 0.00054 21.5 2.0 1 23 667 690 667 690 0.97
11 14 0.00047 0.059 15.1 2.4 1 23 695 718 695 718 0.96
12 14 0.00078 0.096 14.4 3.7 1 23 733 755 733 756 0.96
13 14 0.0001 0.013 17.1 1.6 2 23 758 780 757 780 0.93
14 14 0.00094 0.12 14.1 2.9 3 23 787 807 785 808 0.95

Sequence Information

Coding Sequence
atgGAAAGAGTTtctaataatgatgatgatgaagaaaagGAAATAATAGATAGTCAAACTTTAAGCAAATATGATAAGagctttaaaattgaatttcttgaTTGTACAAATATGAATACAAGTTATGAtgaacAAGAGATCGATGAATCATTATTGGgtgataaagaaaaatttgaaactaataCTATCAAATCAGAATCAGAAGAATTATTTATGGAAGAAAGTTTTGGTGTTCCTCATAATGaagataaaataattgaaattaaaatcgaaaaaatttgTGATAAaTCACAATTTAAAGGcagtaatgatgatgatgatgatgatgacgatgacgatgacgatgattatgaggatgatgatgagaatgatgatgatgatgatgatggtgatgatattAATAAATTGAGGAAAAAAccaaaaggaaaatataaatcTGATATTTCTGATCAGAAAAAaaaatataaatgtggTGAATGTGTTAAAACTTTTTCTGTAGAAGAACGATATAAAGCACATTTAAATGTACACAAAGGCTTGCCAGCGTACAGTTGTAGTACATGTGGCAAAggatttaaaaaattaacaaatttctcTTATCATATGAAAAATCATAAAGGTGAAAGAAGTTTTGTTTGTGAAGTTTGTTCAAAAGCATTCATAGTTAAATGGGATTTATTAATTCATATGAGATGTCACAGAGATGAAAGGCCTTTTGTATGCGAGACATGTGGAAAACAATTTCGAATGCTTAGTCATTTAAAATATCATAGAGATAGCCACCAAGAAGATATCAAGCATGAATGTAATATATGTCATAAATTATTGCGTACTAGAAATTCATTAAGAAATCATATGAGAGATAAACATCTAACGAGACGTTTTAGTTGTgaaGAACTCGAAATCGAAGGAGAAAAGTTTGAATACTGTTTAGGCTTACAGATTTTAGAAATTGCAAATTATCCTGGAATTTGTGCAGTTTGTGAACAGCAATTAAATGATTTCTATACTTTTAAACAACAAGCAATCAAATCTCATTATAAACTACTCGAAatcatattgaaaaataatacttTTAATAATGATGACACAGAAAAAACATCTGAAAGTATAAGTAATCTAGATGATTCTGAAAATATTGAAGACGACGAAGATTTTTTCATATTAGACACAATGGATCGATTCATTACAGAATCCGATGAACATTTCACAGAAGAGagagaatttgaaaatgaaaatgagtttaaaacaacggagaaaaacaaaattgatgaaacatatatttcatttgaaatattaGACATTGATGATGATTGTGGAAATGATTTAAATCGAGAAACCGAAAACATTGGAACCACTTATATGAAAGAAATAGATGGAGCATCCTTTCCAGAAAAGTGTAACGATAATTTTGGATTGACTAGAGTTAATGATGAAGATAGCTTTGAAGAAATAGCCTTAAATGAAAAACCGTCTATAGAGCATTGTGATGACGAACTTCATAAAAATCAATTACAAGAGTTAACAAAAACTTCACGAGAAATAAGAAAAGATTTTAACAATGTTAAACACGATAGTGATTTTTCAGAAACAATATCTTCGGAAAAAGTGCATACGAAAATTCCGGAAACATCATCTAAAAATTCaaTTGAGATATATAAATGCGATGTTTGTGGTGTCAAATTTAATTGCGAACAAAAATTAGAGGGACATATGAATGAACACAAAGGACTTCCAGCTTAtcaatGTAACATATGTGGAAAAACATACAAATTTGAATGTAGAGATTATTATAATGATCATATGAATGATCATCAGGGAATTGAACGCCGTTATAAATGTGAATTATGTCCCAAAAGTTATCATAAAATAAGAGATTTGAATGTGCATATGAGGcttcataaaaatgaaagacCATTCGTGTGCGAGGCATGTGgCAAACAATTTATAACGAAACATTCATTAAATCGTCATTTAGAGACTCACGCTGACGATGTTTATAGATGTAGTATATGTTATAAAAGTTTTCGTGCCAAAAGTACACTAAAAACGCACATGAAAGAAATCCATTTACCAAAGCCTTTCAGTtgtgaaatttgtaaaaaaaagttTGGCCGTAAACAATATTATCAGATGCATATCGACAAAAATCATCGTAATTTAGAAGACGAAAAATGTCAAAAGAATAGAGCACCATTCGTATGCAAGACATGTGggAAAAAACTTAATAGTATAAACTTTTTAAAGCGTCATTTACAAACCCATCATGTAAAATGTGATATATGTCATAAAAGTTTCCAATCCAATTCTAAACTCAATGTACATAAGTTGGAAATTCATTTACCAAAACGTTTTGGTTGTGACATTTGTAATAAAAAGTTTGGTAGAAAACAATATTATAAgatgCATATCGAGAAGCATCATCAACATTTAATAAACATATTATTTCCAAGTACGAAACCAGGAAGAAAGCCAAAATGTAAGAAATTTGAAACATCACAAGAAGAAACTGGGGAAGAAGCTTAA
Protein Sequence
MERVSNNDDDEEKEIIDSQTLSKYDKSFKIEFLDCTNMNTSYDEQEIDESLLGDKEKFETNTIKSESEELFMEESFGVPHNEDKIIEIKIEKICDKSQFKGSNDDDDDDDDDDDDDYEDDDENDDDDDDGDDINKLRKKPKGKYKSDISDQKKKYKCGECVKTFSVEERYKAHLNVHKGLPAYSCSTCGKGFKKLTNFSYHMKNHKGERSFVCEVCSKAFIVKWDLLIHMRCHRDERPFVCETCGKQFRMLSHLKYHRDSHQEDIKHECNICHKLLRTRNSLRNHMRDKHLTRRFSCEELEIEGEKFEYCLGLQILEIANYPGICAVCEQQLNDFYTFKQQAIKSHYKLLEIILKNNTFNNDDTEKTSESISNLDDSENIEDDEDFFILDTMDRFITESDEHFTEEREFENENEFKTTEKNKIDETYISFEILDIDDDCGNDLNRETENIGTTYMKEIDGASFPEKCNDNFGLTRVNDEDSFEEIALNEKPSIEHCDDELHKNQLQELTKTSREIRKDFNNVKHDSDFSETISSEKVHTKIPETSSKNSIEIYKCDVCGVKFNCEQKLEGHMNEHKGLPAYQCNICGKTYKFECRDYYNDHMNDHQGIERRYKCELCPKSYHKIRDLNVHMRLHKNERPFVCEACGKQFITKHSLNRHLETHADDVYRCSICYKSFRAKSTLKTHMKEIHLPKPFSCEICKKKFGRKQYYQMHIDKNHRNLEDEKCQKNRAPFVCKTCGKKLNSINFLKRHLQTHHVKCDICHKSFQSNSKLNVHKLEIHLPKRFGCDICNKKFGRKQYYKMHIEKHHQHLINILFPSTKPGRKPKCKKFETSQEETGEEA

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-