Vcin033900.1
Basic Information
- Insect
- Villa cingulata
- Gene Symbol
- -
- Assembly
- GCA_951394055.1
- Location
- OX596023.1:29746254-29748923[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 21 0.21 26 6.7 0.7 1 23 120 143 120 143 0.88 2 21 6.2 7.7e+02 2.1 0.0 2 10 152 160 151 164 0.86 3 21 9.9 1.2e+03 1.5 0.1 12 23 169 181 166 181 0.85 4 21 0.0008 0.098 14.3 4.2 1 23 187 210 187 210 0.94 5 21 8.1e-05 0.01 17.5 1.8 1 23 217 240 217 240 0.93 6 21 0.0013 0.16 13.7 0.8 2 23 245 266 244 266 0.96 7 21 1.1 1.3e+02 4.5 0.2 5 23 299 317 296 317 0.91 8 21 0.078 9.7 8.1 1.7 2 23 324 345 323 345 0.97 9 21 0.16 19 7.1 0.4 5 23 422 440 419 440 0.93 10 21 0.45 56 5.7 1.7 1 23 467 490 467 490 0.95 11 21 0.0051 0.63 11.8 1.9 1 23 496 519 496 519 0.96 12 21 0.0084 1 11.1 8.2 1 23 525 547 525 547 0.97 13 21 0.035 4.3 9.2 3.4 2 23 554 575 553 575 0.96 14 21 0.28 35 6.3 0.0 3 23 583 604 582 604 0.95 15 21 0.095 12 7.8 0.4 2 23 612 634 611 634 0.94 16 21 0.0001 0.012 17.2 1.2 1 23 640 662 640 662 0.96 17 21 6e-06 0.00074 21.0 1.7 1 23 668 690 668 690 0.99 18 21 2e-05 0.0024 19.4 1.5 1 23 696 718 696 718 0.97 19 21 3e-07 3.7e-05 25.1 0.9 1 23 726 748 726 748 0.97 20 21 1.1e-05 0.0014 20.2 5.1 1 23 754 776 754 776 0.97 21 21 0.0036 0.44 12.3 3.4 1 23 782 805 782 805 0.96
Sequence Information
- Coding Sequence
- atggcaTCCTCTTCAAGATGGCTAACACAGAATGCTAAGAAAAATGTTGCGTCAGCATCATCACCATCAGTAGTAAATAATGAGGAACAGCAGGAATTATATGAAGAATTATCATCGTCGCCGCAATCGCAGCCACAACAaaatattgatttaaataatGCTTACAAGACAATAGTATGCAATAATTATAACGCAGTAAGTTATACACTCACAGGAGGATCAAAAACAGAATTAGGATATGCTGGAGCTGgagaatatgtatatgaaataaatataccAACTGATTTACAAAGCAATGAATTCAGTGATTTAGAAGTAACAAGAGATGattgtgaaatattttatattgtgcCACATCATAAATGTGGTGTTTGCAATATGGTATTTAATATTGTCGATCATTTAGATGATCATGTTTATGAAACACATTTCAAAGAACCGCCGTACAAAGATCAATGTTTAATATGTGGAAAATTATTTGATGTGCAATTATCATCATCGATAACATCAACATTACTTGATGAACATATGCGTACAGATCATCTAGGTATCAATCCATATAGATGTAAATATTGTGCTAGAAGATTTTCAACACGAAATCAATTATTAAATCATAGAGAACATTTACATGAAACACTTTTAAAGCCATACGAATGTGATTTATGTGGCCGTTCATTTTCCGAATTGACacatttaaaaaatcataaatctgaacaacataaaaaaattttaaattgtccATATTGCCCAAAATGTTTCGATATTAACGCcgatttaaaatttcatttacgtGTACATATAAATCCAgaaaaatatatcgatacaattTTACCAGATTACGATAGAAAACAAACTAATTCAAAATCacgtaataaaaatgataattattgcATTATATGCAATACTTTTGTTGAagacattacatatttaaatgatCATTTAAAAACCCATAACGGTCTTTCATTCTTAGAATGTTCAAATTGTAATTGCATATAtgataattttgataaatttatggaACATATTAATagtcataaaaattttaaatctcaATCTATTAAGCGAAAAACGAATAATTTAGGAGTTGAAGATGTACAGAAAATACATTGTGGCTATACTACAAGACCATCAACTCCAGAACCCGTAACagtagaaaataatgaaaatgaacatgaagaatcaaataaaaataatgataataataaaacagtttcaaatgaaaatgaaaatcaaattttgccatcatcagaaaaaatttgtattttgtgtaaaataatatttcgaAATAATCAAGAATATGATAAACATATTAAAAATCATTCGAAATCAATGATATTAAGGAATACTGGACCGTTAGGTACTATTTCATGgagaaataaattattgatatcATATCCGTACCGATGTACATTTTGCAAACgttattttgtattgggcacaacattattattgcataacaaaacCGTACACAAAGAATTGAAACCACATAAATGCAAATTATGCCTAATGCAATATGCTCAATCATCAGAACTAATTAAGCATTACAACAACCTACATCCGGATGTTAAAAAATTCTCATGTGACATGTGTGAccttaaatttaagaaaaaatgtaatttgcGTAATCATAAAAATCATCATAAAGGTAATATTCAATGTAAATGTACAATTTGTGGAAGCGAATGCTCATCTGTAGCTGCCTTAAAAAACCATCGATCAAAACATATTGGTGAAGTAAAGAAGGATTGTCCATTCTGTGAAATACCATACGTTAATGATGTAGATTTAAATATTCATGTAAGTCGGACACATAATGTTAATCCAGAAACATGGAAATGTAGACtttgtgaaatgaaatttaattcagCCGATGAAATAATTCAGCATAATCGTCAAAATCATTATGGTGAACGTCCATATAAATGCGAAAAATGCGGTAAATCATTTGCGTTATTGCATAGTCTTGTCAATCATAAAGTTGTACATGttggtaaaaaaaatttcaaatgtgaATACTgcgataaaaaattttcttttatagcATACTTAAAATcacatattaaaatacataatggtGATCGACCATATATTTGTTCACAATGTCCAAAAACATTTGCCACTCGTGaagatttatataaacataaaaaacagCATTTTGATGATATACCAAAACCCTTTACATGTGAAATATGTGGTAAAAGTTTTATAACATCGACAATGttaaataaacatatgtatttgcataatggtataaaatcatttaaatgtaatttatgtCCGAAAGCATTCGTAAAAAAATCACATTTAAATCATCATATGTTTTTACacattaatattgaattatttagcTGTGAAATATGccatcaaaaatttaaaattccatGTTCTTTAATAAAACATGAAAGACAAgtacatttcatatttaaatcgCAAATGGAAATtcaagaaattgtaaaaaaatcaaaaattgtaGTAGAAAGTAACAAAAATGATATGAAGAGAGAAGATAATAACGAAAATGAAGATTCTAATTCTGATTACGATGAAGATTTTGaagattataatgatgatgaatatgAAGAGGATGAAACAGAAAATAATCAAGATGGAATTGATATCACCTGTTACGATGTTGAAAGCGAAATTGAAAcgactaaaataaatttttag
- Protein Sequence
- MASSSRWLTQNAKKNVASASSPSVVNNEEQQELYEELSSSPQSQPQQNIDLNNAYKTIVCNNYNAVSYTLTGGSKTELGYAGAGEYVYEINIPTDLQSNEFSDLEVTRDDCEIFYIVPHHKCGVCNMVFNIVDHLDDHVYETHFKEPPYKDQCLICGKLFDVQLSSSITSTLLDEHMRTDHLGINPYRCKYCARRFSTRNQLLNHREHLHETLLKPYECDLCGRSFSELTHLKNHKSEQHKKILNCPYCPKCFDINADLKFHLRVHINPEKYIDTILPDYDRKQTNSKSRNKNDNYCIICNTFVEDITYLNDHLKTHNGLSFLECSNCNCIYDNFDKFMEHINSHKNFKSQSIKRKTNNLGVEDVQKIHCGYTTRPSTPEPVTVENNENEHEESNKNNDNNKTVSNENENQILPSSEKICILCKIIFRNNQEYDKHIKNHSKSMILRNTGPLGTISWRNKLLISYPYRCTFCKRYFVLGTTLLLHNKTVHKELKPHKCKLCLMQYAQSSELIKHYNNLHPDVKKFSCDMCDLKFKKKCNLRNHKNHHKGNIQCKCTICGSECSSVAALKNHRSKHIGEVKKDCPFCEIPYVNDVDLNIHVSRTHNVNPETWKCRLCEMKFNSADEIIQHNRQNHYGERPYKCEKCGKSFALLHSLVNHKVVHVGKKNFKCEYCDKKFSFIAYLKSHIKIHNGDRPYICSQCPKTFATREDLYKHKKQHFDDIPKPFTCEICGKSFITSTMLNKHMYLHNGIKSFKCNLCPKAFVKKSHLNHHMFLHINIELFSCEICHQKFKIPCSLIKHERQVHFIFKSQMEIQEIVKKSKIVVESNKNDMKREDNNENEDSNSDYDEDFEDYNDDEYEEDETENNQDGIDITCYDVESEIETTKINF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -