Vcin015857.1
Basic Information
- Insect
- Villa cingulata
- Gene Symbol
- -
- Assembly
- GCA_951394055.1
- Location
- OX596019.1:36287266-36309021[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 21 0.92 1.1e+02 4.7 1.3 2 23 214 232 213 232 0.71 2 21 4.3e-05 0.0054 18.3 4.8 1 23 238 260 238 260 0.96 3 21 0.00096 0.12 14.1 6.4 1 23 266 288 266 288 0.96 4 21 5.1e-05 0.0063 18.1 1.5 1 23 294 316 294 316 0.98 5 21 0.00071 0.088 14.5 4.4 1 23 322 344 322 344 0.98 6 21 2.1e-05 0.0026 19.3 2.2 1 21 350 370 350 371 0.95 7 21 1.4 1.7e+02 4.1 3.0 2 23 532 550 531 550 0.76 8 21 1.1e-05 0.0013 20.3 6.0 1 23 556 578 556 578 0.97 9 21 0.0013 0.17 13.6 8.2 1 23 584 606 584 606 0.98 10 21 2.1e-05 0.0026 19.3 1.1 1 23 612 634 612 634 0.98 11 21 0.00071 0.088 14.5 4.4 1 23 640 662 640 662 0.98 12 21 1.9e-05 0.0024 19.4 0.9 1 21 668 688 668 689 0.96 13 21 1.4 1.7e+02 4.2 0.9 2 17 770 782 769 788 0.69 14 21 2.3e-05 0.0029 19.2 6.5 1 23 794 816 794 816 0.97 15 21 2.5 3.1e+02 3.3 1.6 2 22 1029 1046 1028 1047 0.62 16 21 1.1e-06 0.00013 23.4 2.4 1 23 1053 1075 1053 1075 0.97 17 21 3.8e-05 0.0047 18.5 1.2 1 23 1081 1103 1081 1103 0.95 18 21 0.00013 0.016 16.9 1.1 1 23 1109 1131 1109 1131 0.98 19 21 0.00071 0.088 14.5 4.4 1 23 1137 1159 1137 1159 0.98 20 21 2.5e-06 0.00031 22.2 1.8 1 23 1165 1187 1165 1187 0.99 21 21 0.0019 0.24 13.1 1.7 1 21 1193 1213 1193 1214 0.94
Sequence Information
- Coding Sequence
- atgaataaaaacattaaattaaatgattttaaaagcATATGCAGATTTTGTTTGGAAAAAAAACCGTACATGAaacaattattttcaaatggtgatgatgataatacaGATTATGGTATATCtggaattattaaattttgtctTGGAATTGAGATCTTGGATGACGATAAACTACCAAAACTTCTGTGTAAAAAATGTTACAAAGAACTTTTGATTTGTGATAAATTTCACCAAAAATGCTTAATTGCCGAAGAAACATTGAAAAATGTActcaaaatgaatgaagaacaaaataaacaCGAAATTTCGGTTGTTATTGAACCAATTCCTATCGAAACTGATCCTCTTGATTTCAACTGCACAGAACATACAGAAGAAATATGTTCAGATTCAATAAATGAATCGAATCTTGatacaaaagaagaagaattgaACGAATGGACTGTAACAGAAAACAATCATGATGAGGAAAGTgaagaaattataattgatGAATCCGATATTCATAAAATTGACAATATTAAGAACGATTACtcgaaaaatataattgaaaatgatcCTCCTAATAAGGACCACGAAAATTCTTTGAGTTGTTCAAATGatggaaaaaatattaaaaaacgaAAACGTAAACGTAATCAATGTCCAAAATGTGGAAAATTGTGTTCATATATAACTGCTCATATGGAAACACATTCTGGTATTAAGAAACACATATGTCCACATTGCAGTAAACATTTTTCAACTAAAGGTAGTTTAAAAGAACATATAAATGGTCATTTGGATTCGAGaccaTTTAAGTGTAAACATTGTGATAAATCATTCAATAGTCGAAAATCAATGTATGCTCATCATGAATGGCATaataaggaagaaaaatatgaatgtaatatgtGCGGAAGAAAATTTGTATACGAATCAACATATCGTTATCATTTGAAAGTTCATAATCAGATAAGACAACATAAATGTGATATTTGTAGCAGAGAATTTATAACGAAGCATGCAATTAAAAAACATTATCGTGTACATACTGGCGAGAGACCGTATAAATGTAAAGAGTGTGATAAATCTTTCAAAACATCTCATAGTTTATCAGGACATCGTAAGATCTTGGCTGACGATAAACTACCAAAATTTCTGTGTAAAAAATGTTACAAAGAACTTTTAAATTGTGATAAATTTCACCAAAAATGCTTAATTGCCGAAGAAACATTGAAAAATGTActcaaaatgaatgaagaacaaaataaacaCGAAATTTCGGTTGTTATTGAACCAATTCCTATCGAAACTGATCCTCTTGATTTCAACTGCACAGAACATACAGAAGAAATATGTTCAGATTCAATAAATGAATCGAGTCTTGATATAAAAGAAGAACATATATATGAATGGACTGTAACAGAAAATCATAATGAGGAATGTgaagaaattataattgatGAATCCGACATTCATAAAATTGACAATATTAAGAACAATTACTCgaataatataattgaaaatgatcCTCCTAATAAGGACGACGAACATTTTTTGAGTTGTTCAAATGatggaaaaattattaaaaaacgaAAACGTAAACGTGATCAATGTACAAAATGTGGAAAATTGTGTTCATATATAAATTCTCATATGAGAACACATTCTGGTATTAAGAAACACAAATGTCCACATTgcaataaacatttttcaacTAAAGGTAGTTTAAAAGAACATATAAATGGTCATTTGGATTTGAGaccATTTAAGTGTAAACATTGTGATAAATCATTCAATAGTCGAAAATCAATGTATGCTCATCATTCACGGCATAATAAGGAAGAAAAGTACGAATGTAATATATGTGGAAGAAAATTCGTATACGAATCAACATATCGTTATCATTTGAAAGTTCATAATCAGATAAGACAACATAAATGTGATATTTGTAGCAGAGAATTTATAACGAAGCATGCAATTAAAAAACATTATCGTGTACATACTGGCGAGAAACCGTATAAATGTAAGGAATGTGATAAATGTTTCGGATCATCAGATGCTTTGTCAGCACATCGAAAAATAAATGAATCGAGTCTTGATATAAAAGAAGAACATATATATGAATGGACTGTAACAGAAAATCATAATGAGGAGTGTgaagaaattataattgatGAATCCGACATTCATAATATTGGCAATATTAAGAACGATTACTCgaataatataattgaaaattatcccCCTAATAAGGACCACGAAAATTCTTTGAGTTGCACAAATGatggaaaaattattaaaaaacgaaaatgtaTACGTGTTCAATGTCCAATCTGTggaaaattatgtacaaatatacgtTCTCATATTGAAACACATTCTGGTATTAAGAAACACAAATGTCCACATTGCAAGAAACATTTTTCAACTAAAGGTAGTTTAAAAGAACATATAAATGGTCATTTGGATTCGAGATTTTGTTTGGAAAAAAAACCGTACATgaaacaaatattttcaaatgatgatgatgataatacagATTATGGTATACCtggaattattaaattttgtctTGGAATTAAGATCTTGGCTGATGATAAGCTACCAAAATTTCTGTGTAAAAAATGTTACAAAGAACTTTTGAATTGTGATAAATTTCACCAAAAATGCTTAATTGCCGAAGAAACATTGAAGAGTATACTAAAAAAGAATGACAAAGAAAGTGAACAAAAACATGAAAGTTCGCAAGTTCTAGTTACTAATAAAATTCCAATCAAAATAGATCCGCTTGATTTAAGTTGCAcagaaaatacagaaaaaattagCCCAGATTCAATAAATGAACCGATAATCGAAATAAAAGAAGGAAAAGTATATGAATGGACTGAAACAGAAAACGATCACATCGAAGAAAACAATGATATCACGAAATGTGGAGAAATTATAATTGATAAATCCGATATTCATGAAATTGACAATATTAAGAACGATTACTCGAAAAATATAACTGAAAATAATCCTCCTAATAAGGACCACGAAAATTCTTTGAGTTGTtcaaatgatgaaaaaattattaaaaaacgaaaacgaaagcGTGATCAATGTCCAAAATGTGGAAAATTGTGTTCAAGTATATATTCTCATATGGAAACACATTCTGGTATTAAGAAACACAAATGTCCACATTGTGATAAAGAATTTTCAACTAAAGGTAGTTTAAATGAACATATAAATGGTCATTTTGATTTGAGACCATATAAGTGTAAACATTGTGACAGATCATTCAGTGGCCCAAAATCATTGTATGCTCATGCTTTAGGGcataataaagaagaaaaatacgaaTGTAATATATGTGGGAGAAAATTTGTATACGGAACAACATACCGGTATCATATGAAAGTTCATAATCAGATAAAACAACATAAATGTGATATTTGTAGCAGAGAATTTATAACGAAGCATGCAATTAAAAAACATTATCGTGTACATACTGGCGAGAAACCGTATAAATGTAAGGAATGTGATAAATGTTTCGGATCATCAGATGCTTTGTCAGCACATCGAAAAGTGCATACAAAGGAGATTTCACACTATTGCAATAAATGTAATGCTGGCTTCGTATATAAATCAACACTAAACAGTCATCTAAAAAAATGTCAGTAA
- Protein Sequence
- MNKNIKLNDFKSICRFCLEKKPYMKQLFSNGDDDNTDYGISGIIKFCLGIEILDDDKLPKLLCKKCYKELLICDKFHQKCLIAEETLKNVLKMNEEQNKHEISVVIEPIPIETDPLDFNCTEHTEEICSDSINESNLDTKEEELNEWTVTENNHDEESEEIIIDESDIHKIDNIKNDYSKNIIENDPPNKDHENSLSCSNDGKNIKKRKRKRNQCPKCGKLCSYITAHMETHSGIKKHICPHCSKHFSTKGSLKEHINGHLDSRPFKCKHCDKSFNSRKSMYAHHEWHNKEEKYECNMCGRKFVYESTYRYHLKVHNQIRQHKCDICSREFITKHAIKKHYRVHTGERPYKCKECDKSFKTSHSLSGHRKILADDKLPKFLCKKCYKELLNCDKFHQKCLIAEETLKNVLKMNEEQNKHEISVVIEPIPIETDPLDFNCTEHTEEICSDSINESSLDIKEEHIYEWTVTENHNEECEEIIIDESDIHKIDNIKNNYSNNIIENDPPNKDDEHFLSCSNDGKIIKKRKRKRDQCTKCGKLCSYINSHMRTHSGIKKHKCPHCNKHFSTKGSLKEHINGHLDLRPFKCKHCDKSFNSRKSMYAHHSRHNKEEKYECNICGRKFVYESTYRYHLKVHNQIRQHKCDICSREFITKHAIKKHYRVHTGEKPYKCKECDKCFGSSDALSAHRKINESSLDIKEEHIYEWTVTENHNEECEEIIIDESDIHNIGNIKNDYSNNIIENYPPNKDHENSLSCTNDGKIIKKRKCIRVQCPICGKLCTNIRSHIETHSGIKKHKCPHCKKHFSTKGSLKEHINGHLDSRFCLEKKPYMKQIFSNDDDDNTDYGIPGIIKFCLGIKILADDKLPKFLCKKCYKELLNCDKFHQKCLIAEETLKSILKKNDKESEQKHESSQVLVTNKIPIKIDPLDLSCTENTEKISPDSINEPIIEIKEGKVYEWTETENDHIEENNDITKCGEIIIDKSDIHEIDNIKNDYSKNITENNPPNKDHENSLSCSNDEKIIKKRKRKRDQCPKCGKLCSSIYSHMETHSGIKKHKCPHCDKEFSTKGSLNEHINGHFDLRPYKCKHCDRSFSGPKSLYAHALGHNKEEKYECNICGRKFVYGTTYRYHMKVHNQIKQHKCDICSREFITKHAIKKHYRVHTGEKPYKCKECDKCFGSSDALSAHRKVHTKEISHYCNKCNAGFVYKSTLNSHLKKCQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -