Vcin037674.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Villa cingulata
Gene Symbol
-
Assembly
GCA_951394055.1
Location
OX596025.1:9486634-9494863[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 16 0.00077 0.095 14.4 0.1 3 20 176 193 174 195 0.92
2 16 0.00036 0.044 15.4 0.8 2 23 271 292 270 292 0.95
3 16 8.8e-06 0.0011 20.5 2.7 1 23 298 320 298 320 0.99
4 16 0.00042 0.053 15.2 3.3 1 23 325 347 325 347 0.98
5 16 0.0015 0.19 13.5 3.3 1 23 353 375 353 375 0.94
6 16 0.00077 0.095 14.4 0.1 3 20 430 447 428 449 0.92
7 16 6e-07 7.4e-05 24.2 4.1 2 23 525 546 524 546 0.97
8 16 0.0021 0.26 13.0 4.7 1 23 551 573 551 573 0.97
9 16 3e-05 0.0037 18.8 1.2 1 23 578 600 578 600 0.98
10 16 0.00013 0.016 16.8 0.3 2 23 604 625 603 625 0.97
11 16 0.00042 0.053 15.2 3.3 1 23 630 652 630 652 0.98
12 16 0.00017 0.021 16.4 0.7 1 20 658 677 658 678 0.96
13 16 1.9e-05 0.0024 19.4 0.4 1 23 686 708 686 708 0.96
14 16 7.9e-06 0.00098 20.7 3.1 1 23 716 738 716 738 0.98
15 16 4.7e-06 0.00059 21.3 0.2 1 23 743 765 743 765 0.99
16 16 0.029 3.6 9.4 0.1 1 16 785 800 785 802 0.89

Sequence Information

Coding Sequence
ATGAAACATCATTGGAGTAATATGAAATGGAATATAGAAAACTTCGATTATGACAACGATCCATTCCAAAAtataaaagcagaaaaaaataatacgatTGTGAATTATACCAATAGAGAGGAAAGTATTCGTTGTACTGACAAAATCATCAGCTCATATCAACATGTACACAAAGTAAACGATCAACAAAACATGGACAAAAATCCCGAATTTCTAGTTCATATAAACAATGATGATGATAGCAAAAATATACCAGAATGTGTTACGGAAAATACAAATCTAAATATAGACACAAATACAAATGATGGATCGTTTCAATTCGAGTcagatatttcatttttatctggTGATAATGATGATCATTCAGAAGCACAAACCACAAAAAAGAACATTGAAAATGGTTCAacgaaattaaataatgaaatttgtgATGAAAATGTATGTTCAgaggaaaaaattcaaaatcattatTTGGTTGATCATTGTGAAACCAATTTTGTGTCGTCAACTAATCCGAATATTATATGTGATATTTGTAATGCAAGTTTTTCAACTAAAGAAAATTTCGAAACTCATTTTTCGATATGTGCTAAAACTGAAAAAGGAGAAATCAAAATGAGTATAATAGCGCAATCAAATGATGCGAACAATAAAACAAATGTGAACGACCAGGATCTTGAGAAGAGTTGTGAAGGAAATGTATTTGCAGAATCACTTGATTTAAATCCATGTGTATGTAGATTTTGTTATCAACAGTTTCAAACACCCTTGAAGAGAAGAAAACATGAGCTAATTCACACCGGTGAACTTAcatgtaaaatttgtaaaaaaatgtttcgTTCGAAAACACAGTTCGATATACATGCAATAATTCATACAGAAATGAATccatttaaatgtaaaatgtgtGGCATAATGCTTTCCGATAAGGAACATTTAAAAATGCATATGAAAAGACACGGTGAGAGAGAATACAAATGTGATTACTGTGACAAGAAATTCTTTAcattaagtgaaaaaaaatatcatgaaaGAATTCATACTGGAGAAAAACCATACGAATGTaatcaatgtaaaaaaaagttcAGATTAAAAACGTCATTAGTGAAACACTCAACAAATCATTCAGAAGCACAAACCACAAAAAAGAACATTGAAAATGGTTCAacgaaattaaataatgaaatttgtgATGAAAATGTATGTTcagaagaaaaaattcaaaatcattatTTGGTTGATCATTGTGAAACCAATTTTGTGTCGTCAACTAATCCGAATATTATATGTGATATTTGTAATGCAAGTTTTTCAACTAAAGAAAATTTCGAAACTCATTTTTCGATATGTCCTAAAACTGGAAAAAGAGAAATCAAAATGAGTATAATAGCGCAATCAAATGATGCGAACAATAAAACAAATGTGAACGACCAGGATCTTGAGAAGAGTTGTGAAGGAAATGTATTTGCAGAATCACTTGATTTAAATCCATGTGTATGTAGATTTTGTTATCAACAGTTTCAAACACCCTTGAAGAGAAGAAAACATGAGCTAATTCACACCGGCGAACTTACATGTAAAATTTGTGATAAGTCGTATCCAACTAAACGTCATCTAAACAGGCATATGAAAAGACACGGACCAAAAGCATTTAAATGTGATTACTGCCACAAGGAGTTCTTCACATTAAGTGATAAAAAACGTCATGTTGAAAATCATCTTGCAAAAAAGTTTCCATGTGAAATTTGTAGTAAAACATTTCGCAGCAAACGAATGTTAAGTATTCATAATAATAcgcataaaataataaaatgtaaaatttgtgGTGTAATTCTTCGCAATGAGGAAAGTTTAAAAATGCATATGAAAAGACACGGTGAGAGAGAATACAAATGTGATTACTGTGACAAGAAATTCTTTAcattaagtgaaaaaaaatatcatgaaaGAATTCATACTGGAGAAAAACCATATGAATGTAATCATTGTCCAAAAAGATTCATATCGAAAAAAGTATTAACGAATCACTTAGTATGTCATAACAATAAAAGAGAATACTTATGTTCTGAATGTGGTTTTGCTTTTAATGTTCGTGCAAATTTAAAACgtcatttaaaattacataaaattgaaaaaccaACTAGTTATGACTGCAGTATAtgtcaaaaaaaatacaatagaaaaacaaattttgtaaatcACATGAAAACGCATTCAAATACAGAATACTCGTGTACGGAATGTGGTAAAGTTTTTACATATCCTCTTGGATGGGCTCAGCATATGAAAACACATAAACgagaacaacaaaataaatcaatattgaAAGACTCAAGTACCAACGAAAGAAAATACTTATGTCCAGAATGTGGTTTTGCATTTACTGATTATTCAAATATGAGTGAAGGTGAACAGATTATCAGTAATGGAAATAATGAATTTAGGGGTTGGGTACGAAATCCCGAAATCCATAATCCAGAAAGACAAAATCCAGACGGGACGAAAACCAGACAAGATAGAATCCAACGGGACAAAATCCAGACTGTAAATCCAGATGAAATGAGTTTGCCGCAAACTTATTTCATCTGGATTTACAGTGCGGATTTTGTATATACTATCGtctaa
Protein Sequence
MKHHWSNMKWNIENFDYDNDPFQNIKAEKNNTIVNYTNREESIRCTDKIISSYQHVHKVNDQQNMDKNPEFLVHINNDDDSKNIPECVTENTNLNIDTNTNDGSFQFESDISFLSGDNDDHSEAQTTKKNIENGSTKLNNEICDENVCSEEKIQNHYLVDHCETNFVSSTNPNIICDICNASFSTKENFETHFSICAKTEKGEIKMSIIAQSNDANNKTNVNDQDLEKSCEGNVFAESLDLNPCVCRFCYQQFQTPLKRRKHELIHTGELTCKICKKMFRSKTQFDIHAIIHTEMNPFKCKMCGIMLSDKEHLKMHMKRHGEREYKCDYCDKKFFTLSEKKYHERIHTGEKPYECNQCKKKFRLKTSLVKHSTNHSEAQTTKKNIENGSTKLNNEICDENVCSEEKIQNHYLVDHCETNFVSSTNPNIICDICNASFSTKENFETHFSICPKTGKREIKMSIIAQSNDANNKTNVNDQDLEKSCEGNVFAESLDLNPCVCRFCYQQFQTPLKRRKHELIHTGELTCKICDKSYPTKRHLNRHMKRHGPKAFKCDYCHKEFFTLSDKKRHVENHLAKKFPCEICSKTFRSKRMLSIHNNTHKIIKCKICGVILRNEESLKMHMKRHGEREYKCDYCDKKFFTLSEKKYHERIHTGEKPYECNHCPKRFISKKVLTNHLVCHNNKREYLCSECGFAFNVRANLKRHLKLHKIEKPTSYDCSICQKKYNRKTNFVNHMKTHSNTEYSCTECGKVFTYPLGWAQHMKTHKREQQNKSILKDSSTNERKYLCPECGFAFTDYSNMSEGEQIISNGNNEFRGWVRNPEIHNPERQNPDGTKTRQDRIQRDKIQTVNPDEMSLPQTYFIWIYSADFVYTIV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-