Vcin037690.1
Basic Information
- Insect
- Villa cingulata
- Gene Symbol
- -
- Assembly
- GCA_951394055.1
- Location
- OX596025.1:9579576-9580811[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 1.1e-07 1.3e-05 26.5 2.1 2 23 66 87 65 87 0.97 2 12 0.00097 0.12 14.1 5.8 1 23 92 114 92 114 0.97 3 12 2.6e-05 0.0032 19.0 1.2 1 23 119 141 119 141 0.97 4 12 5.3e-05 0.0066 18.1 0.3 2 23 145 166 144 166 0.97 5 12 0.00017 0.022 16.4 3.3 1 23 171 193 171 193 0.98 6 12 7.2e-05 0.0089 17.6 0.7 1 20 199 218 199 219 0.96 7 12 7.9e-06 0.00098 20.7 0.4 1 23 227 249 227 249 0.96 8 12 3.2e-06 0.0004 21.9 3.1 1 23 257 279 257 279 0.98 9 12 1.9e-06 0.00024 22.6 0.2 1 23 284 306 284 306 0.99 10 12 4.1e-06 0.00051 21.5 0.2 1 23 326 348 326 348 0.96 11 12 5.8e-07 7.2e-05 24.2 2.3 1 23 356 378 356 378 0.98 12 12 1.2e-07 1.5e-05 26.4 0.5 1 23 383 405 383 405 0.98
Sequence Information
- Coding Sequence
- ATGAGTATAATAGCGCAATCAAATGATGCGAACAATAAAACCAATGTGAACGACCAGGATCTTGAGAAGAGTTGTGAAGGAAATGTATTTGCAGAATCACTTGATTTAAATCCATGTGTATGTAGATTTTGTTATCAACAGTTTCAAACACCCTTGAAGAGAAGAAAACATGAGCTAATTCACACCGGCGAACTTACATGTAAAATTTGTGATAAGTCGTATCCAACTAAACGTCAACTAAACAGGCATATGAAAAGACACGGACCTAAAGCATTTAAATGTGATTACTGCCACAAGAAGTTCTTTACATTAAGCGATAAAAAACGTCATGTTGAAAATCATCTTGCAAAAAAGTTTCCATGTGAAATTTGTAGTAAAACATTTCGCAGCAAACGAATGTTAAGTATTCATAATAGTAcgcataaaataataaagtgtaaaatTTGTGGTGTAATTCTTCGCAATGAGGAAAGTTTAAAAATGCATATGAAAAGACACGGTGAGAGAGAATACAAATGTGATTACTGTGACAAGAAATTCTTTAcattaagtgaaaaaaaatatcatgaaaGAATTCATACTGGAGAAAAACCATATGAATGTAATCATTGTCCAAAAAGATTCATATCGAAAAAAGTATTAACGAATCACTTAGTATGTCATAACAATAAAAGAGAATACTTATGTTCTGAATGTGGTTTTGCTTTTAATGTTCGTGCAAATTTAAAACgtcatttaaaattacataaaattgaaaaaccaACTAGTTATGACTGCAGTATAtgtcaaaaaaaatacaatagaaaaacaaattttgtaaatcACATGAAAACGCATTCAAATACAGAATACTCGTGTACGGAATGTGGTAAAGTTTTTACATATCCTCTTGGATGGGCTCAGCATATGAAAACACATAAACgagaacaacaaaataaatcaatattgaAAGACTCAAGTACCAACGAAAGAAAATACTTATGTCCAGAATGTGGTTTTGCATTTACTGATTATTCAAATATGGTACGTCATTTGAAactacataaaattgaaaaaccaACTAGTTATGACTGCAGTATAtgtcaaaaaaaatacaataaaaaatcaaatttggtAAATCACATGAAAACGCATTCAAATACAGAATACTCGTGTACGGAATGTGGCAGGGTCTTTACAAATCCTGTTGGATTGGCTCACCATATGAATAAACATAAACGAGAACAACAAAATTAA
- Protein Sequence
- MSIIAQSNDANNKTNVNDQDLEKSCEGNVFAESLDLNPCVCRFCYQQFQTPLKRRKHELIHTGELTCKICDKSYPTKRQLNRHMKRHGPKAFKCDYCHKKFFTLSDKKRHVENHLAKKFPCEICSKTFRSKRMLSIHNSTHKIIKCKICGVILRNEESLKMHMKRHGEREYKCDYCDKKFFTLSEKKYHERIHTGEKPYECNHCPKRFISKKVLTNHLVCHNNKREYLCSECGFAFNVRANLKRHLKLHKIEKPTSYDCSICQKKYNRKTNFVNHMKTHSNTEYSCTECGKVFTYPLGWAQHMKTHKREQQNKSILKDSSTNERKYLCPECGFAFTDYSNMVRHLKLHKIEKPTSYDCSICQKKYNKKSNLVNHMKTHSNTEYSCTECGRVFTNPVGLAHHMNKHKREQQN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -