Vcin015852.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Villa cingulata
Gene Symbol
-
Assembly
GCA_951394055.1
Location
OX596019.1:36258531-36277073[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 24 0.66 81 5.2 0.2 3 23 345 362 343 362 0.86
2 24 6.9e-07 8.5e-05 24.0 3.1 1 23 368 390 368 390 0.98
3 24 4.7e-05 0.0058 18.2 2.9 1 19 396 414 396 418 0.94
4 24 0.2 24 6.8 0.3 2 22 748 765 747 766 0.74
5 24 5.1e-05 0.0064 18.1 7.5 1 23 772 794 772 794 0.96
6 24 2 2.4e+02 3.7 0.9 9 23 799 813 798 813 0.93
7 24 5.1e-06 0.00063 21.2 1.5 1 21 819 839 819 840 0.96
8 24 0.69 86 5.1 0.2 1 8 1006 1013 1006 1025 0.86
9 24 2.2e-05 0.0027 19.3 3.0 1 23 1031 1053 1031 1053 0.97
10 24 8.7e-06 0.0011 20.5 1.2 1 23 1074 1096 1074 1096 0.99
11 24 0.0004 0.05 15.3 4.5 1 23 1102 1124 1102 1124 0.98
12 24 0.0021 0.26 13.0 1.8 1 21 1130 1150 1130 1151 0.95
13 24 0.44 55 5.7 1.1 1 23 1317 1336 1317 1336 0.77
14 24 5.1e-05 0.0064 18.1 7.5 1 23 1342 1364 1342 1364 0.96
15 24 8.7e-06 0.0011 20.5 1.2 1 23 1385 1407 1385 1407 0.99
16 24 0.0004 0.05 15.3 4.5 1 23 1413 1435 1413 1435 0.98
17 24 0.0021 0.26 13.0 1.8 1 21 1441 1461 1441 1462 0.95
18 24 0.39 48 5.9 0.1 2 17 1543 1555 1542 1561 0.72
19 24 8.6e-06 0.0011 20.5 2.9 1 23 1567 1589 1567 1589 0.97
20 24 0.00029 0.036 15.7 6.0 1 23 1595 1617 1595 1617 0.94
21 24 3.6e-05 0.0045 18.6 1.3 1 23 1623 1645 1623 1645 0.99
22 24 3.5e-05 0.0043 18.6 4.8 1 23 1651 1673 1651 1673 0.98
23 24 5.9e-06 0.00073 21.0 4.6 1 23 1679 1701 1679 1701 0.99
24 24 0.0028 0.35 12.6 1.9 1 22 1707 1728 1707 1728 0.94

Sequence Information

Coding Sequence
ATGGTGTATTGTTGtgtcaaaaattgtaaaaattccTTCAAGAACCatgaaaatggaattaaatttcacagatttcCGAAGTGTGAAGAAACACAGAAAAAATGGCTCAGTGTATGTAAAAAGGACAATATAAATACGAGCAATGCAAGAATATGTTCTCAACATTTTAATTCAGAGTCTTACACAGAAAATGGTGATCTAAATAAATTTGCTATACCAAATGAATGTCAAACAAAAGTAATTATAGATTTTGAAAAATTTTGTTTGGAAAAAGAACCGTACATGAAGCACATATttttagatgatgatgatgacgtaGATTATGATATTTCTGGTATGATTGAATTTTGTCTTGGCATAAAAATCTTGGAAGATGATAAATTACCAAAATTTCTATGTGAGAAATGTCATAATGAACTTCTGCATTGTAGTACATTTCATAAAAAATGCTTTAATGCTGAAGAAAGATTAAAGAATATACTAAAACAGAATGACgaacaaaatatatatgaaagtaCTGTAGTTACCATAACAATTCCCATCAAAACAGATCCATTAGATATCAATTGCACACAACATACAGAAGAATTATGCCCAGATTcaATAAACGAATCGTTAgtcgaaataaaagaaaaaaaagtatatgaATGGACTGAAACAGAAAGCGAACATATCGAAGAAAACAACGATATCGAGAAATGTGgagaaattattattgataaatcTGATATTCATGATATTGGCGATATTGAGAACGATTACTCGACTAATGTAATTGAAAATGATTCTCCTAATATGGAAGATGAAAACAGAACACAATGCGATTATAGCGAAGAAAGCGATCATATCGATAAATGTAAAGAAATTCTAATTGAAGAATTCAATATTCAAGATATTGATAATTTCGAGAACAATTACTCAAATATTCGAGCTGAAAATAATGTTCCTATTAAGGACAATAGTATTTCTTTAAATTGTacaaatgatgaaaaaataattaaaaaacgaaaacgCATTAGACGAAAAGTTATATGCCCAATTTGTGGAAAATTAGTTGGACATTTAAAAGCTCATATAGAAACGCATTCTGGTATCAAGAAATACAAATGTCCACATTgcgataaaaaattttcaagtaaaagTAGTTTCAATGAACATATAAATGCTCACCTTAATTTGAGatcgTATAAGTGCAATCATTGTGATAAATCATTCAATAGCAGAAAATCATTGAATGCTCATGATATAAGTcataaaaaggaagaaaaATTTTGTTTGGAAAAAGAACCGTACATgaaacaaatattttcaaatgatgatgataatatagaTTATGGTGTTTCTGAAATGATTGAATTTTGTCTTGGAATAAAGATATTGCCTGACGATAAATTACCAAAATTTCTATGTGAAAAATGTCATAATGAACTTCTGCATTGTAGTACATTTCATAAAAAATGCTTTAATGCTGAAGAAAGATTAAAGAATATACTAAAAAAGAATGAAGGACAAAATAAATATTCGGTAGTTACCACAACAATTCCGATCAAAACAGATCCACTGGATTTAAATTTCACAGAAAATACAGAAGAAATATATCCAAATTCAGTaaaATTTTGTTTGGAAAAAAAACCGTACATgaaacaaatattttcaaatgatgatgatgataatacagATTGTGGTATACCTGGAATGATTAAATTTTGTCTTGGAATTAAGaTCTTGACTGACGATAAACTACCAAAATTTCTATGTAAAAAATGTTACAAAGAACTTTTAAATTGTGataaatttcatcaaaaatGCTTAATTGCCGAAAAAACATTGAAGAGTATACTAAAAAAGAATGACAAAGAAAGTGAACAAAAACATGAAAGTTCGGTAGTTACTGCTACAACTAGAATCAAAATAGATCCGCTTGATTTTAGCTGCACAGAACATACAGAAAAAATATGCCCAGATTCATTAAACGAACCTACAGtcgaaataaaagaagaaaatgtaaatgaatgGACTGAAGCAGAAAGCAATCATATTGAAGAAAACAATGATATCACGAAAAGTGGAGAAATTATTATTGATGAATCTCATATTCATGATATTAACGATGTTGAGAACGATTACTCgaataatataattgaaaatgattCTCCTAATAAGGacgataaaaattcatttagttgtacaaatgatgaaaaaataattcaaaaaagaaaatgtactaAACGTAAACGTAATCAATGTCCAATATGTGGaaaattgtttacaaatatAACAACTCATATAGAAACACATTCTGATATTAAGAAACACATATGTCCACATTgcaataaacatttttcaactaaacataatttaaatgaaCATATAAATGGTCATTTTGATTTAAGAGAATTTATAACAAAACATGATGTTAAAAAACATTATCGTGTACACACTGGTGAAAGACCTTATAAATGTAAAGAGTGTGATAAATCTTTCAAAACATCTTATAGTTTATCAGAACATCGTAAGaTCTTGGCTGACGATAAACTGCCAAAATTTCTATGTACAAAATGTTATGGAGAACTTCTGAATTGcaataaatttcacaaaaaatgcTTAATTGCCGAAGAAACATTAAAGAATATACTAAAAACGAATGATGAACAAAGTATATATGAAAGTTCAGTAGTTACTTCGATTCCCATTTCAACAAATTCACATGATTTCAACTTCACAGAAGATACAGACGAAATATGTTCAGATTCCATAAATGAATCGACGATTGATataaaagaagaacaaatatATGAGTGGAATGGGGAAGAAAATAATCATGATGAGAAATTCgaagaaattataattgatGAATCCGATATTCATGAAATTGACAATATTAAGAACGATTCTTCGAATgatatatttgaaaatgattCTCCTAATAAGGAAGATGAAAATTCTATGAGTTGTGCAAATGatggaaaaataattaaaaaacgaaaacgTAATTGTAAACGTGATCCCAAACGTTATCAATGTCCAATATGTGGAAAATTAGTTACAAAAATAACAACTCATATAGAAACACATTCTGATACCAAGAAGCATAAATGTCCACACTGCGATGGAACATTTAgaactaaaaataatttaaatgaacatATAAATGGTCATTTTGATTTAAGTCGAAAATCATTGTATGTTCATAACTTACGGCATAATAAGGAAGAAAAGTACGAATGTAATATATGTGGAAGAAAATTTGTATACGAATCAACATATCGTTATCATATGAAAGTTCATAATCAGATAAGACAACATAAATGTGATATTTGTAACAGAGAATTTATAACGAAGCATGCAATTAAAAAACATTATCGTGTACATACTGGCGAGAGACCGTATAAATGTAAAGAATGTGTTAAATGTTTCAGATCATTTGGTGCTTTGTCAGAACATCGTAAGaTCTTGGCTGACGATAAACTGCCAAAATTTCTATGTACAAAATGTTATGGAGAACTTCTGAATTGcaataaatttcacaaaaaatgcTTAATTGCCGAAGAAACATTAAAGAATATACTAAAAACGAATGATGAACAAAGTATATATGAAAGTTCAGTAGTTACTTCGATTCCCATTTCAACAAATTCACATGATTTCAACTTCACAGAAGATACAGACGAAATATGTTCAGATTACATAATTGAATCGACGATTGATataaaagaagaacaaatatATGAGTGGACTGGGGAAGAAAATAATCATGAtgagaaatttgaagaaattataattgatGAATCCGATATTCATGAAATTGACAATATTAAGAACGATTCTTCGAATgatatatttgaaaatgattCTCCTAATAAGGAAGATGAAAATTCTATGAGTTGTGCAAATGatggaaaaataattaaaaaacgaaaacgTAATTGTAAACGTGATCCCAAACGTTATCAATGTCCAATATGTGGAAAATTAGTTACAAATATAACAACTCATATAAAAACACATTCTGATATTAAGAAACACATATGTCCACATTgcaataaacatttttcaactaaacataatttaaatgaaCATATAAATGGTCATTTTGATTTAAGTCGAAAATCATTGTATGTTCATAACTTACGGCATAATAAGGAAGAAAAGTACGAATGTAATATATGTGGAAGAAAATTTGTATACGAATCAACATATCGTTATCATATGAAAGTTCATAATCAGATAAGACAACATAAATGTGATATTTGTAACAGAGAATTTATAACGAAGCATGCAATTAAAAAACATTATCGTGTACATACTGGCGAGAGACCGTATAAATGTAAAGAATGTGTTAAATGTTTCAGATCATTTGGTGCTTTGTCAGAACATCGTAAGATAAATGAATCGACGGTTGATATAAAAGAACAAATATATGAGTGGACTGTGAAAGAAAATAATCATGATGAGAAATGTgaagaaattataattgatGAATCCGACATTCATAATATTGGCAATGTTAAGAACGATTACTCgaataatataattgaaaatgatgCTCCTAATAAGGACCACGAAAATTCTTTGAGTTGCACAAATGatggaaaaattattaaacaacgAAAACGTAAACGTGATCAGTGTCCAATATGTGGGAAATTGTTTGCAAATATAAATGCTCACGTGGAAACACATTCTGATATCAAGAAACACAAATGTCCACATTgcgataaaaaattttcaactaaAGGTAGTTTAGATGAACATATAAATGGTCATTTTGATTTGAGaccaCATAAGTGTAAACATTGTGATAAATCATTCAATAGTCGAAAATCATTGCGTGTTCATAATTTATGGcataataaagaagaaaattacgAATGTAATATATGTGGAAGAAAATTCGTATACGAAACAACATATCGTTATCATATGAAAGTCCATAATCCGATAAGACAGCATAAATGTGACGTTTGTAACAGAGAATTCGTAACAAAACATGCACTTAAAAAACATTATCGTGTACATACTGGCGAGAGACCGTACAAATGTAAAGAATGTGATAAATGTTTCGGATCATCAAGTACTTTATCAAAACATCGAAAAGTGCATACAAAGGAGATTTCACACTATTGCAATAAATGTAATGCAGGCTTTGTATATAGATCAACATTAAAAAATCATCTTAAAAAATGTCAGTAA
Protein Sequence
MVYCCVKNCKNSFKNHENGIKFHRFPKCEETQKKWLSVCKKDNINTSNARICSQHFNSESYTENGDLNKFAIPNECQTKVIIDFEKFCLEKEPYMKHIFLDDDDDVDYDISGMIEFCLGIKILEDDKLPKFLCEKCHNELLHCSTFHKKCFNAEERLKNILKQNDEQNIYESTVVTITIPIKTDPLDINCTQHTEELCPDSINESLVEIKEKKVYEWTETESEHIEENNDIEKCGEIIIDKSDIHDIGDIENDYSTNVIENDSPNMEDENRTQCDYSEESDHIDKCKEILIEEFNIQDIDNFENNYSNIRAENNVPIKDNSISLNCTNDEKIIKKRKRIRRKVICPICGKLVGHLKAHIETHSGIKKYKCPHCDKKFSSKSSFNEHINAHLNLRSYKCNHCDKSFNSRKSLNAHDISHKKEEKFCLEKEPYMKQIFSNDDDNIDYGVSEMIEFCLGIKILPDDKLPKFLCEKCHNELLHCSTFHKKCFNAEERLKNILKKNEGQNKYSVVTTTIPIKTDPLDLNFTENTEEIYPNSVKFCLEKKPYMKQIFSNDDDDNTDCGIPGMIKFCLGIKILTDDKLPKFLCKKCYKELLNCDKFHQKCLIAEKTLKSILKKNDKESEQKHESSVVTATTRIKIDPLDFSCTEHTEKICPDSLNEPTVEIKEENVNEWTEAESNHIEENNDITKSGEIIIDESHIHDINDVENDYSNNIIENDSPNKDDKNSFSCTNDEKIIQKRKCTKRKRNQCPICGKLFTNITTHIETHSDIKKHICPHCNKHFSTKHNLNEHINGHFDLREFITKHDVKKHYRVHTGERPYKCKECDKSFKTSYSLSEHRKILADDKLPKFLCTKCYGELLNCNKFHKKCLIAEETLKNILKTNDEQSIYESSVVTSIPISTNSHDFNFTEDTDEICSDSINESTIDIKEEQIYEWNGEENNHDEKFEEIIIDESDIHEIDNIKNDSSNDIFENDSPNKEDENSMSCANDGKIIKKRKRNCKRDPKRYQCPICGKLVTKITTHIETHSDTKKHKCPHCDGTFRTKNNLNEHINGHFDLSRKSLYVHNLRHNKEEKYECNICGRKFVYESTYRYHMKVHNQIRQHKCDICNREFITKHAIKKHYRVHTGERPYKCKECVKCFRSFGALSEHRKILADDKLPKFLCTKCYGELLNCNKFHKKCLIAEETLKNILKTNDEQSIYESSVVTSIPISTNSHDFNFTEDTDEICSDYIIESTIDIKEEQIYEWTGEENNHDEKFEEIIIDESDIHEIDNIKNDSSNDIFENDSPNKEDENSMSCANDGKIIKKRKRNCKRDPKRYQCPICGKLVTNITTHIKTHSDIKKHICPHCNKHFSTKHNLNEHINGHFDLSRKSLYVHNLRHNKEEKYECNICGRKFVYESTYRYHMKVHNQIRQHKCDICNREFITKHAIKKHYRVHTGERPYKCKECVKCFRSFGALSEHRKINESTVDIKEQIYEWTVKENNHDEKCEEIIIDESDIHNIGNVKNDYSNNIIENDAPNKDHENSLSCTNDGKIIKQRKRKRDQCPICGKLFANINAHVETHSDIKKHKCPHCDKKFSTKGSLDEHINGHFDLRPHKCKHCDKSFNSRKSLRVHNLWHNKEENYECNICGRKFVYETTYRYHMKVHNPIRQHKCDVCNREFVTKHALKKHYRVHTGERPYKCKECDKCFGSSSTLSKHRKVHTKEISHYCNKCNAGFVYRSTLKNHLKKCQ

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01519186;
90% Identity
iTF_01519186;
80% Identity
iTF_01519186;