Vcin037715.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Villa cingulata
Gene Symbol
-
Assembly
GCA_951394055.1
Location
OX596025.1:9694620-9702562[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 25 0.029 3.6 9.4 6.9 1 23 55 77 55 77 0.98
2 25 0.0014 0.17 13.6 3.3 1 23 86 108 86 108 0.96
3 25 5.5e-05 0.0068 18.0 5.8 1 23 114 136 114 136 0.99
4 25 9.1e-05 0.011 17.3 2.8 1 23 142 164 142 164 0.95
5 25 3.6e-05 0.0044 18.6 0.7 1 23 170 192 170 192 0.98
6 25 0.0014 0.18 13.6 0.6 1 23 198 220 198 220 0.96
7 25 7.3 9e+02 1.9 1.8 2 14 282 294 281 303 0.71
8 25 0.064 7.9 8.4 3.1 2 23 367 388 366 388 0.96
9 25 5.7e-06 0.00071 21.1 1.6 1 23 394 416 394 416 0.98
10 25 2.3e-05 0.0028 19.2 3.0 1 23 422 444 422 444 0.98
11 25 1.5e-05 0.0019 19.7 0.9 1 23 450 472 450 472 0.98
12 25 1.4e-05 0.0017 19.9 8.0 1 23 478 500 478 500 0.99
13 25 0.0002 0.024 16.3 2.2 1 23 506 528 506 528 0.95
14 25 4.2e-05 0.0052 18.4 0.4 1 23 534 556 534 556 0.98
15 25 0.0071 0.88 11.3 0.1 1 14 562 575 562 578 0.90
16 25 0.066 8.2 8.3 1.0 1 23 596 619 596 619 0.97
17 25 0.0002 0.024 16.3 0.8 1 20 710 729 710 731 0.94
18 25 0.22 28 6.6 2.8 1 23 783 805 783 805 0.91
19 25 2.5e-06 0.00031 22.2 5.1 1 23 811 833 811 833 0.99
20 25 7.8e-05 0.0096 17.5 0.4 1 23 839 861 839 861 0.99
21 25 0.00071 0.088 14.5 1.6 1 23 867 889 867 889 0.99
22 25 0.00028 0.035 15.8 2.8 1 23 895 917 895 917 0.97
23 25 0.0015 0.18 13.5 1.5 2 23 924 945 923 945 0.97
24 25 5.4e-05 0.0067 18.0 0.2 1 23 951 973 951 973 0.98
25 25 0.0058 0.72 11.6 2.2 1 23 979 1001 979 1001 0.97

Sequence Information

Coding Sequence
ATGGATATGGATAGCGTAAATAAAACACCAGAAAAAATTATCTCGTCAATTTTTACAGAATCAGCAAGAATTGATCCTTTATTGTGTAATTATTGTCCACTTCGTTTGAACTGTATCCAAAGACGTATAGAACACGAAGGTATTCATACTGGTGAGAAACCGtttaaatgtgaaatttgtaaaaaatgttaCAGTAGTAGATCAAGACATACAATTCATATTAAAATGCACAAAGGAATAACACCAAAAAAATCTCATAAGTGTAAATTTTGTGGAAAAGCTTATGTAcgaaaatctgaaaaaaatcaACATGAAAATTTACATACCGGTGAAAAACCTTATCAATGTACTCAGTGCGGAAAATGTTATAGATTGCAGAATAAATTAAAGCTGCATATGAAAAAGCATTTAGGTATCAGATCACATAAATGTGATAAATGcaataaaagtttttatacaAAACAAGAACTGACAGAACATGCTGTAATGCATACTAATGATAGACCGTTTGAATGTAAAATTTGCAAAGCAACATTTCCCAGAAAAAGAGCATTAAAATCAcatgaaaaaattcattcagATCATACTGAATACGTTTGCAATATATGTGGTAAGGGTTTTAAACAAGGACCAGGATTATACTGTCATATGAAAATTCATGATGAGGAAGAAAACGAAAaggtaataataaaattgaataatgaaGAGGAGGAGAAAGAAATCTCAAATATAGAAGAAGTAGATGAAGAAAATGATTCGATTGGATCTGTTAATAGTTCGGAAAATTCACAGGTGAAAATTGTtgagaagaaaagaaaagaaaaatgtgaaaaacaaatattaatttgCGATATATgccaaaaacaatttcaatcAGAAAAAATTTGTGAAAGACATAAGAAAATACATTTAGAAATACCTGATCCATTTCTAACAAttacaaataatgaaattattgatgaatataatttaaattttttaaatgccaATAATGAATCAGAATTTGATTATTCAAATTCGAACAAGCAACAAGAAGAATGTATATTAGAACAAAATccgcaacaaaaacaaaaatcatttattgTTGTTGATCCATTGATTTGTAAGTATTGCAATCATCGTTTTAAGGAAAGATCGAAACGTTTAATTCATGAACGTATCCATACTGGTGAAAAACCATTTCAATGTGATTCATGTGAAAAACGCTTCCGTACAAAACGTCTCTTACAAAATCACATTATGATACATAAAGGTGAACGCCCACATAAATGCCCGTATTGTAAATCAGCATTTACACATAAAATGAATCTTGTCGTTCATATTCGTGTACATTTAGGTGATAAACGTTTCGAATGTGAATTATGTGGTAAACGTTTTGTAcgtaatattgaaaaaaaaattcatcaaagaACTCATACTGGTGAGAAACCATATCAATGCGATTATTGTGGTAGATGTTTTTCAACATGCAGTAAATTGACTGAACATCGTAAACgtcatacaaatacaaaaccATATCAATGTACTATTTGTGGTAAACGTTTCTATTCTAAATGCCTGATGACAAATCATGCTGTTGTACATTCAAATGAAAGACCATTTGTTTGTGATATTTGTCAAGCAACATTTCCAAGAAAACGCGCCTTACAATCacacaaaaaaattcattcagatATTAAAGAGTATGTATGCAAAATTTGCGGTAAAGCATTTGCACAAAATGCTGaaaaagAACAATTAAAATGTGGTGAAATTTTAGTAACACCATCACTTGGGAATATTACTTTCCAATGTCTATTTTGTTCTTTATCATATACTGAAATAGATGAATTTTTGACTCACATAAAATCTaaacattttccatttttaataaatgaaaatatgaaaaaagatttaaatgaatttgacaGTGATGATAATGCTGCACTGAACTCTTTTAATATTGATATTAAGGAGGAATTTGACAAAGATGAAGATGACAATGACACGAATTCGAGAAACTTGAATGCTAGTACcaataaattaaatgatgaagaaaaaaatgaaagtaataaTACAGATCCACTTGAAGAGATGGATGTTTccaaaaaagtgaaaaaattgaaaagaaaaaaatctaattCTAGTTTTCCTTGTAATATCTGCAAAAAACAATTTACATCAGAAAGCACTtttgaaaaacacaaaatatctTGTCAAGCTGTTTTTGAACATTCATTGCGTGTTTCAAATATATCAGAAAAAGCGGAATCATTAAATGATAGTGAAGATGATGAACCAACATTGGAAAATAAAAGTGATAAAAGCTTTGATCCGATATTTGTTCAATCACATGATATCAATCCTTTTATATGTCGATATTGCAATCGAAATTTTAAGAGTAGACCAGATCGTGTAGAGCATGAATGTTTACATACTGgtgaaaaattgtataaatgtgAGAAATGTGATAAGCGTTTTCGTCAAAGACATTTATTAAGAAATCATCTAAAAGTACATGATGGTATAAAACCATATAAATGTGATGTATGTGATGCATCATTTACATTAGTATCAAATTACCGAGTGCATGCTAGACGACATTTAGGTGAAAAACCATACAAATGTGATTACTGTGATATGAGATTTGTTGTCAGCACTGAAAAAAAAAGTCACGAAAGAACACACACTGGTGAGAAACCATTCCAGTGTATTGAATGTGGCCAATGTTATTCTAGGCAATCACGATTAACTGAACATATTAAAAGACATACCGGTTTAAAACTAGTGAGATGCCCAGAATGTGACAAgcattttttttcaagaaaatcaATGCTTGATCACGCTAAAATTCATTCTGATATTAAGAAATATAAATGTGATGAGTGTAATGCAGCATTTGTTAAGAAAAGTGCTCTAGTatcacataaaaaaattcattcagatGCGAGGGACTATATTTGTCATATTTGTAATAAAGGATTTAAACAAGGTCCAGGATTAATATGTCATATGAAAagtcataaaaatacataa
Protein Sequence
MDMDSVNKTPEKIISSIFTESARIDPLLCNYCPLRLNCIQRRIEHEGIHTGEKPFKCEICKKCYSSRSRHTIHIKMHKGITPKKSHKCKFCGKAYVRKSEKNQHENLHTGEKPYQCTQCGKCYRLQNKLKLHMKKHLGIRSHKCDKCNKSFYTKQELTEHAVMHTNDRPFECKICKATFPRKRALKSHEKIHSDHTEYVCNICGKGFKQGPGLYCHMKIHDEEENEKVIIKLNNEEEEKEISNIEEVDEENDSIGSVNSSENSQVKIVEKKRKEKCEKQILICDICQKQFQSEKICERHKKIHLEIPDPFLTITNNEIIDEYNLNFLNANNESEFDYSNSNKQQEECILEQNPQQKQKSFIVVDPLICKYCNHRFKERSKRLIHERIHTGEKPFQCDSCEKRFRTKRLLQNHIMIHKGERPHKCPYCKSAFTHKMNLVVHIRVHLGDKRFECELCGKRFVRNIEKKIHQRTHTGEKPYQCDYCGRCFSTCSKLTEHRKRHTNTKPYQCTICGKRFYSKCLMTNHAVVHSNERPFVCDICQATFPRKRALQSHKKIHSDIKEYVCKICGKAFAQNAEKEQLKCGEILVTPSLGNITFQCLFCSLSYTEIDEFLTHIKSKHFPFLINENMKKDLNEFDSDDNAALNSFNIDIKEEFDKDEDDNDTNSRNLNASTNKLNDEEKNESNNTDPLEEMDVSKKVKKLKRKKSNSSFPCNICKKQFTSESTFEKHKISCQAVFEHSLRVSNISEKAESLNDSEDDEPTLENKSDKSFDPIFVQSHDINPFICRYCNRNFKSRPDRVEHECLHTGEKLYKCEKCDKRFRQRHLLRNHLKVHDGIKPYKCDVCDASFTLVSNYRVHARRHLGEKPYKCDYCDMRFVVSTEKKSHERTHTGEKPFQCIECGQCYSRQSRLTEHIKRHTGLKLVRCPECDKHFFSRKSMLDHAKIHSDIKKYKCDECNAAFVKKSALVSHKKIHSDARDYICHICNKGFKQGPGLICHMKSHKNT

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-