Vcin008742.1
Basic Information
- Insect
- Villa cingulata
- Gene Symbol
- -
- Assembly
- GCA_951394055.1
- Location
- OX596018.1:11261330-11268371[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 22 0.00013 0.016 16.8 0.6 5 23 360 378 357 378 0.93 2 22 1.4e-06 0.00018 23.0 0.3 1 23 384 406 384 406 0.98 3 22 0.00056 0.07 14.8 1.1 1 23 412 434 412 434 0.99 4 22 1.2e-05 0.0015 20.1 0.4 1 23 440 463 440 463 0.96 5 22 0.0007 0.087 14.5 2.0 1 23 471 493 471 493 0.97 6 22 8.3e-05 0.01 17.4 2.8 1 23 501 523 501 523 0.97 7 22 8.3e-06 0.001 20.6 4.0 1 23 529 551 529 551 0.98 8 22 0.0003 0.038 15.7 0.7 1 23 555 578 555 578 0.96 9 22 0.00021 0.026 16.2 1.2 1 23 587 609 587 609 0.98 10 22 0.00033 0.04 15.6 0.9 1 23 617 640 617 640 0.93 11 22 3.7e-06 0.00046 21.7 2.6 1 23 920 942 920 942 0.96 12 22 4.7e-07 5.9e-05 24.5 2.6 1 23 948 970 948 970 0.98 13 22 0.0066 0.81 11.5 5.7 1 23 976 998 976 998 0.98 14 22 1.3e-05 0.0016 20.0 0.9 1 23 1004 1026 1004 1026 0.98 15 22 0.013 1.6 10.6 4.9 1 23 1035 1057 1035 1057 0.97 16 22 0.00066 0.082 14.6 1.3 1 23 1066 1088 1066 1088 0.98 17 22 7.8e-06 0.00097 20.7 0.9 2 23 1095 1116 1094 1116 0.97 18 22 2.3e-05 0.0029 19.2 0.5 1 23 1122 1145 1122 1145 0.93 19 22 2.4e-05 0.003 19.1 1.0 1 23 1159 1181 1159 1181 0.99 20 22 0.12 15 7.4 0.3 1 23 1190 1213 1190 1213 0.90 21 22 0.17 21 7.0 0.0 3 23 1223 1244 1222 1244 0.93 22 22 0.019 2.3 10.0 1.2 3 23 1251 1271 1250 1271 0.96
Sequence Information
- Coding Sequence
- atgaatataaaagttGATATAAATGTATGCCGAGTTTGTTTAAAATCAGAAAATGGAATATCAGTTTTTAGTGATAGTacaattatagaaaaatttcaatttagtaCACAAATAAAGataaaagaaaatgatggttTGCCAACATTATTATGCAAAAGATGTGATGCACGTCTTAAAATtgcatatgaatttaaaaaacaagCAAAAACATCTGATAAacaattaaaagaatttataaatcgtattaataatcaatttaaagaagttacaaataatacaacattatcatcatcatcatcgacaataattgaaaattttgatgaaattattgatgataataatgaagaagaaaaaaatttattaattgaagCTGGTTGTAaaataatatcatcatcatcatcatcatcatctaataatgaagaaataaaacaaaaacataagcaacaacaagaacaacagcACAAAGAAATTCATGATCAGGaacaatttattatacaaaataataatgaattaagTAATAACAGTGGTAATAATAATGATCAGATTAGAATAGCTACAATTGAAGATCATtatcagcagcagcaacagcaacatcgAAAGCATattgaaaatcaaattattGGAAATAGTATTGAAgaagattttcataatttaatacAGGAGGATAATTGCAGTACACAAGAATATGATGAAACAATAATCGAAGATCAAAATCATGATCAAGATGAAGATAATTATGGTGACGATGATTGTATTTACgttaataattttcatgaaGAATGTGATGTTAACAATGATGATATTATAAATGGTGAAAATAGTAATACGAATCAATTAAATGATTTAGATGATGATACTAAAGATAATGTTAAAGAACAAATAATATCAACAACAAATACAGCAGAAGAatgtaataatacaataatttatcaAGAATTGATTCCAGTTAATAAAGAACCAGTTGAATTTATTATTAGCAATTGTTctgataaattattatcaaatgcaaaaaatataatttcagatCCATTAATAAcggcaaaaaatgaaaaaccaggatattcaaatatatgtattaaatgtgatCGTGATTTTAGTACGAAAACAAATCTTATCAGACATATGATGGCACATGACGGTATTAAACCATTTCAATGTAATATATGTGGTAATGGTTTTACACAGAATGGTTCATTAAAACAGCATATGCTAATTCATACTGGTGAACGTCCATTTAAATGTCAAGTATGCGGAAGAGGTTTTACACAAGGTAAATCGCTTGTATTTCATATGCGTCGACATACTGGTGAAAAACCATATTCATGCGATATATGCGGTTTAACATTTCGACAAAAAGATGGAATGAAGCGTCATGTAATAATGAAACATACTGATGCAACAACAAAAGCTCATATTTGTTCAATATGCAGTCGTGTGTTACAATCGAAATATTCATTAAATGTTCATATGAAAAAGCATTTAATACAATCAGAATCATCACATCGTTgtgaaatatgtaaaaaaaatttcagcaCAAAAAATTCATTAGTTATACATGAACGTCAACATACTGGCGAAAAACCATATAAATGTGAACATTGTAATAAAGAATTTCCACGTAGAAGCTCATTGAAGACACattcaaaaattcatgaaaaaccATATAAATGTGAACTATGTAATAaagattttaaacaaaaaaatgtattgatAACACATGTACAGAATGTACATAGCAATAATAAATCTGTAAAATCATTTCAATGTGGAAAATGTTTAAAAAGTTTTGCAAtaaaaCGAAATTTATTACAACATTTACGTAatcataataaagaaaatatgacAATGTATAAATGTGAAGAATGTAATATAGCATTTAATACAAAACGTGGTCTAAAATTACATCGTTTTAATGAGCACAAAGAGACTGTTACAGATTTAAATGAATgcgatatatgtaatataccaTTTGTATCGatctATAAAGATGATGGTTTACCAACGAATATTTGTGATCGATGTAATGCAAGATTAAAAATTGCATATGATTTTCGTATTCAATCTGTATTATCAGATAGACATTTACGTTCATTTATTAATAAAGTTAATAatcaatttattgaatttacaAATACAGCAATAGTTATaacaaaagataaaaatgaagatgaaattttACATGAAACTGGATTAATTCAAGAAgataataatgaacaaaatactgtaattaaaaaattaaaaattacacaaaCAGATGAAACAGAAAGTTATGTtggaaataacaaaaacaatctAGAGCAAATAGACtacaatttaaaagaaatacaaaatgatCAGGAAGAACAAAAACATGAACAAGAGGAACAACAACATGAACAAGAGGAAGAACAACATGAACAAGAGGAAGAACAACATGAACAAGAGGGACAACATATGGAATATGAACAATTCAAGGGTGATCATGAAGAACAAGAAAATCAAATAGATAATAATGAAGAACCATATGAAATGTTACAAGTTGAACGTGTTGAAAACAATTATGAAACGGATCAAGAAGATAAtgtcaatgatgatgatgatgatgatgatgatggtaatgaATGGGAAGCTGATGGTGATAATGTATTAAATTATGAACATGGAAcagaaaaaaattcacaaaaaaaaaaatatcgttaTACTGAAATGTTTATTGATCCATTAAAATCGAATGGTaatgaagaaagaaaagaatatagaaaaaatacaaGCGGTACACATATCTGTGTAAAATGTAATAAAGATTTTTCGACAAGTTCAAATTTACAAAGACATTTAGATACACATGAAGGAAGGAGACCGTATCATTGTAATTTATGTGGTAAAAGTTTTACACAGAATGGATCATTAAAGAAACATCAATTAATACATACTGGAGAAAGGCCACATAAATGTGATGTTTGTGAAAGATCATTTACACAGCATACAACATTAGTATTTCATATGCGTCGTCATACTGGTGAAAAACCATATTCATGCGGTCAATGTGAACGTTCATATCGAATGAAAGATGCATTAAagaGACATATTCAAACTCATTATACAGATGCTAAACAAAAAGTTCATATATGTTCGATATGCCATCgtcaattaaaatcaaaatattcttTAGGAATGCATATGAAACGTCATGaggaacaaaaaaataatcaatcatATTCATGTGAAATAtgtagtaaaacatttcaatcattatcatcatttgaTTTACATGTTAAACGTCatacagaaataaaatatttaaaatgtgatCAATGTGATGAATATTTCAGTACAAAAAGATTATTAACAGCACATATTAAAACTCATTCTGAAATAAAACCATATAATTGTAATGAATGCGATAAATCATTTactgatgaaaaattattaaatgatcatgtacaatttatacataattttaatactACACTTATTAATGAAAGATCAAAATTATATCAATGTGAAATATGTtcgaaaatgtataaaattaaggcaaatttatttgaacatttaaaaacccatgataattcaaaaaataaaacattatttaaTTGCGATGAATGTGGAATTGCATTCGGAATGTTACGATCATATAAATTACATCGTGTTAATAAACATAAAGAAATTATAGATGATTTAAATGATtgttatatatgttatataccaTTTGTATCTGTTAAAGATTTAAATCAACATTTAGAAGAAGTACATGATAGAATCGATGAAATATGTAATGAAtgtaatacacattttatatcaaaaaaatcATATGATGATCATATATTAGAACATCAAATTGAACTTGAATAA
- Protein Sequence
- MNIKVDINVCRVCLKSENGISVFSDSTIIEKFQFSTQIKIKENDGLPTLLCKRCDARLKIAYEFKKQAKTSDKQLKEFINRINNQFKEVTNNTTLSSSSSTIIENFDEIIDDNNEEEKNLLIEAGCKIISSSSSSSSNNEEIKQKHKQQQEQQHKEIHDQEQFIIQNNNELSNNSGNNNDQIRIATIEDHYQQQQQQHRKHIENQIIGNSIEEDFHNLIQEDNCSTQEYDETIIEDQNHDQDEDNYGDDDCIYVNNFHEECDVNNDDIINGENSNTNQLNDLDDDTKDNVKEQIISTTNTAEECNNTIIYQELIPVNKEPVEFIISNCSDKLLSNAKNIISDPLITAKNEKPGYSNICIKCDRDFSTKTNLIRHMMAHDGIKPFQCNICGNGFTQNGSLKQHMLIHTGERPFKCQVCGRGFTQGKSLVFHMRRHTGEKPYSCDICGLTFRQKDGMKRHVIMKHTDATTKAHICSICSRVLQSKYSLNVHMKKHLIQSESSHRCEICKKNFSTKNSLVIHERQHTGEKPYKCEHCNKEFPRRSSLKTHSKIHEKPYKCELCNKDFKQKNVLITHVQNVHSNNKSVKSFQCGKCLKSFAIKRNLLQHLRNHNKENMTMYKCEECNIAFNTKRGLKLHRFNEHKETVTDLNECDICNIPFVSIYKDDGLPTNICDRCNARLKIAYDFRIQSVLSDRHLRSFINKVNNQFIEFTNTAIVITKDKNEDEILHETGLIQEDNNEQNTVIKKLKITQTDETESYVGNNKNNLEQIDYNLKEIQNDQEEQKHEQEEQQHEQEEEQHEQEEEQHEQEGQHMEYEQFKGDHEEQENQIDNNEEPYEMLQVERVENNYETDQEDNVNDDDDDDDDGNEWEADGDNVLNYEHGTEKNSQKKKYRYTEMFIDPLKSNGNEERKEYRKNTSGTHICVKCNKDFSTSSNLQRHLDTHEGRRPYHCNLCGKSFTQNGSLKKHQLIHTGERPHKCDVCERSFTQHTTLVFHMRRHTGEKPYSCGQCERSYRMKDALKRHIQTHYTDAKQKVHICSICHRQLKSKYSLGMHMKRHEEQKNNQSYSCEICSKTFQSLSSFDLHVKRHTEIKYLKCDQCDEYFSTKRLLTAHIKTHSEIKPYNCNECDKSFTDEKLLNDHVQFIHNFNTTLINERSKLYQCEICSKMYKIKANLFEHLKTHDNSKNKTLFNCDECGIAFGMLRSYKLHRVNKHKEIIDDLNDCYICYIPFVSVKDLNQHLEEVHDRIDEICNECNTHFISKKSYDDHILEHQIELE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -