Basic Information

Gene Symbol
TRERF1
Assembly
GCA_951394055.1
Location
OX596024.1:26438347-26442923[-]

Transcription Factor Domain

TF Family
MYB
Domain
Myb_DNA-binding domain
PFAM
PF00249
TF Group
Helix-turn-helix
Description
This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 1 1.7e-08 3e-05 25.2 0.1 3 45 825 867 823 868 0.94

Sequence Information

Coding Sequence
ATGCGATTACATGGTGGCTACTTTAAAAAAGATACTGAAacaaaaaaatctgaaaaaaaagaatCTTCTGGACCACCACTACAAACGGCCAGTATTGGTGTTAGAGctttaattgaagaaaaaattattagtaAACGAAGCAAAGATTTAAAGGGTGCCTTTGTAGTTCCTGCCCCTCCTTTAACTTCAGttagaaaaattgaaagtgaAAATAGTTTTTTAACACCGAAAACGCCTAATCAATTAACAGCGGCAGGAACAACAACTGGGACAATAACGAATATGGTTCAAGGAACTGTAACTGCATCGATGCAACTACAAAAGCAAAATATCCAAAAGGTTACGAGTGTTGCCACTTCCACACAAAATGCTACTACAGATACTAAAGATGCCACTTTGATCGAGCTACTAAAGCGTGGAACGAAGCTTGCAGTGAAACGAACATGTTCGGATCCAGgacaaatttataataacaaCACATCAACAATTGTTTTACCGTCAGATCCATCGATTTCTGCAACAAATACACCGAATCCAACACCGCCATTATCTATATCACTTCCAGGTGAATCAACTCCTCTGTCTTTAACGATTTCACAGGCTGCAAACGGTGCTGGAGATGTTTTCACATTAACGTATTCTGCCGACTCTTCAACAACATTTTTTGGAGATTCGGACGTTTATAGTGTTTCAGATACTGCAATGCTGCTTCAAGCAGTCGATTCCATACAACTTTTAAATGATTCCACCACTGCTGAACAGCTAGATGAGATCGCTTCTCTAAGTGAATACTCTTTGACTAGTGATAATAATACGATCTCTGACAGCAACAGTTTAGGCCGAGAATATGTGACGTCATCGAAACAATTGCAAGCTGTCCTTAATTCACCACTTCCAGAAGGCCTAGCTGATTTCAGCACTCTTCATTCCAAGGATTATGTTTTGTACAACTGCACTAATAATGCATCACCTGCAACTCAGTCTTCAGCTTCTCCATTGCCTTCACCTTTAGCATACCCGACTCCACCAGCAAGTCATGAGGCTGTTGCACAATCTTCACCATTTTTAGATGATTCACATCATTTCTCTGAAACAAATGCATTCTTTGATGAAAAAGtcagtaataattttattgaagaaaatagCAGTCAATTTTTCAAAAGCACAAACGATGCTAACatgacagaaaatgaaaaaatactgAAACTCAAGAACGAACTATTTAACGAAAGCAAAAGTGTTCTCGAAGTGAACGACACGTTTTTTAAAACTGAAGACACCAGTGACGTTTTCGATAATCCAGTAAAAGTTGAGGatcttttaaatgaaaacaatgGCGAGCCATGTGATCTTAAAGATTTCTCTACACAAAATCTTTCATTCCTAGATGAACCACAGAATTTCTTAGATGATGCTAGAAATCCACCTTCTCCATTATCCGAGTCCTTTTTCACAAGTGCCATAACAAGTGCTGAAGAAGTTAAAGAAGCTTTAAAAGATGTTCTACCAAATGAAACACTGCATAACGAAAGTAGCAGTACTAATGACATTGATCTTTACTATCTACCAGGATTAACTCTGCAATCACAAATGATGCCTAACTCAGATGATCCTTTACTGTCATCATCACCAAAGGATTTCGTTCAGAGAGTGCAATTACcccaacaacagcaacatcagcATCTGCATCAACAACAACAGATTCAAATACCACTAGCTTCAATCAAGCAAGAAACTGGACAAATTTATAGCATTCCAAATGCGAAGAAAATAAGATCTAATGAAGATTTGCCACCAATTATCACCGTTCAATCACAACACATTGTTCCTCAACAGCATGATATCGATCGATTCGTTAGTCATGCTGCAAATTTTAACAACAATAATACAGTTGTCATCTCTCATCCGACTGCTCCTCCTCCTCTTCCTCCTGCACGTTCTAATTTCCATCAAACCTTCACGAATTCCATCCTAAAACGAAGATTACGTCAAGGGCAAACAAAGAAAACAGAAATTTATCGTTCAAAATTACGAAAACCGTCAACAACACACTATACCCCATCACCAATGCTAAATCCTGACCGAAAATCATCCGGACTTTATTCAAATCTACCAAAAGCGATACTGCAGGACACTATTGATCTAGTAGATGAGTTCGACGATGCTGCCAGTTTGGTAGCATTTCTTGATGATTCTAAAGTAAATATTGGAACAGCATATCAGGCAACAATTCCTTCTGCTGGACAGAATTCGAATTACAATAATGAAGAATACGATGAATTGATGTGGGATCCAAATGTAACAACTAACGATAAACTTTTAACCAGATTTATTGAATTGAGTAAATCATCGGCAGTTCCATTAGGATTTCATTCAGAAGAAGTAGCACTAAAAGCACTACTAGATGCTCAGGGTGAAACACATATTGCTGTTCTAAATTTACTTCAGACACCATCAAATCATGTACATTTGAAATGGTCAACTGATCAAATTGAGGCATTCCTAAAGGGTTTGGAAAAGCATGGAAAAGACTTTTATCGAATAGCAAAAGAgATATCATTAAAATCATCTGGTGATTGCATTCAgttatattatttttggaaaaaattatgTGCCGATTATAAAATTACTCATCTAAAACAGGATTCAGATTCATCTATTGACAGCAACCAATCAAATCACTCACATTCAGAATTACGACCCCATGTTTGTGAAATGCCAGATTGTTCAGCTAGTTTTACTTCGAAGGCAGCACTCCATGGACATACGAGAATACATTGCATCGGTAGAAATTTAAATCATTCTGGAAATAATAGTCAAACGTTAGGACATAATATATCATCTTCATCGCATGGTACAAATATTAAAGATGATTTTCCCTGCAAGGTGTGCGGCAAGGTGTTCAGTAAGGTGAAAAGTCGTAGTGCACACATGAAATCCCATCGACCTCAGGAAAATGATCCTAACATAAATTcctaa
Protein Sequence
MRLHGGYFKKDTETKKSEKKESSGPPLQTASIGVRALIEEKIISKRSKDLKGAFVVPAPPLTSVRKIESENSFLTPKTPNQLTAAGTTTGTITNMVQGTVTASMQLQKQNIQKVTSVATSTQNATTDTKDATLIELLKRGTKLAVKRTCSDPGQIYNNNTSTIVLPSDPSISATNTPNPTPPLSISLPGESTPLSLTISQAANGAGDVFTLTYSADSSTTFFGDSDVYSVSDTAMLLQAVDSIQLLNDSTTAEQLDEIASLSEYSLTSDNNTISDSNSLGREYVTSSKQLQAVLNSPLPEGLADFSTLHSKDYVLYNCTNNASPATQSSASPLPSPLAYPTPPASHEAVAQSSPFLDDSHHFSETNAFFDEKVSNNFIEENSSQFFKSTNDANMTENEKILKLKNELFNESKSVLEVNDTFFKTEDTSDVFDNPVKVEDLLNENNGEPCDLKDFSTQNLSFLDEPQNFLDDARNPPSPLSESFFTSAITSAEEVKEALKDVLPNETLHNESSSTNDIDLYYLPGLTLQSQMMPNSDDPLLSSSPKDFVQRVQLPQQQQHQHLHQQQQIQIPLASIKQETGQIYSIPNAKKIRSNEDLPPIITVQSQHIVPQQHDIDRFVSHAANFNNNNTVVISHPTAPPPLPPARSNFHQTFTNSILKRRLRQGQTKKTEIYRSKLRKPSTTHYTPSPMLNPDRKSSGLYSNLPKAILQDTIDLVDEFDDAASLVAFLDDSKVNIGTAYQATIPSAGQNSNYNNEEYDELMWDPNVTTNDKLLTRFIELSKSSAVPLGFHSEEVALKALLDAQGETHIAVLNLLQTPSNHVHLKWSTDQIEAFLKGLEKHGKDFYRIAKEISLKSSGDCIQLYYFWKKLCADYKITHLKQDSDSSIDSNQSNHSHSELRPHVCEMPDCSASFTSKAALHGHTRIHCIGRNLNHSGNNSQTLGHNISSSSHGTNIKDDFPCKVCGKVFSKVKSRSAHMKSHRPQENDPNINS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01519872;
90% Identity
iTF_01519872;
80% Identity
iTF_01519872;