Vcin029122.1
Basic Information
- Insect
- Villa cingulata
- Gene Symbol
- -
- Assembly
- GCA_951394055.1
- Location
- OX596022.1:19384896-19389630[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 0.0021 1.1 10.3 0.0 9 39 80 111 80 113 0.94 2 2 0.0021 1.1 10.3 0.0 9 39 257 288 257 290 0.94
Sequence Information
- Coding Sequence
- atgtctcaatttacgaacgcggagtatgcagatatgatttattgctatggactgagcaatggaaattcaatgcaagcacggagagaatatcatcagcgatttccacatagaagacttcctcatcatacggttttccagaggacgtttcagagactcagagaaactggctctgtacaaaatattacttcCTCTAATAGAAATGATGTGTCAATTTCAGTAGAGTTAGAAGAAAGATTACTGGAAATGGTCAGAAATGATCCTACGACCAGCACAAGGCGCATAGCGCGTGTTACCGGATTATCACAATCAACAGTTTGGAGAGTGCTAAATAGGGAAGACCTCTACCCTTACCACATGACACCGGTACATGAAATTTTGCCGCAAGACAGGACAAATCGCAAGAACTTCTGTTCTTGGCTGCTTGAAAAGGATTTTGATGACGATACATTTATTGATAACATTATTTGGACAGATGAGGctcaatttacaaaaagtgGTGCAATAAATCTACACAATCTACATGTTTGGTCTGCAGAAAATCCTAACGCTGCTCGGCAGgctgacattcaaaactttttagaCGAAATGCCACTGGCACAATTAGGACGCATTTATTATCAACATGACGGAGCACCATCTCATTCCGAAAGATGTATGCGAAATTGGCTGAACGAAAACTTCGGGGAGAGATGGATAGGACGAAACGGTCCAAATCCGTGGCCCCCCAGAAATGATGTGTCAATTTCAGTAGAGTTAGAAGAAAGATTACTGGAAATGGTCAGAAATGATCCTACGACCAGCACAAGGCGCATAGCGCGTGTTACCGGATTATCACAATCAACAGTTTGGAGAGTGCTAAATAGGGAAGACCTCTACCCTTACCACATGACACCGGTACATGAAATTTTGCCGCAAGACAGGACAAATCGCAAGAACTTCTGTTCTTGGCTGCTTGAAAAGGATTTTGATGACGATACATTTATTGATAACATTATTTGGACAGATGAGGctcaatttacaaaaagtgGTGCAATAAATCTACACAATCTACATGTTTGGTCTGCAGAAAATCCTAACGCTGCTCGGCAGgctgacattcaaaactttttagaCGAAATGCCACTGGCACAATTAGGACGCATTTATTATCAACATGACGGAGCACCATCTCATTCCGAAAGATGTATGCGAAATTGGCTGAACGAAAACTTCGGGGAGAGATGGATAGGACGAAACGGTCCAAATCCGTGGCCCCCCAGGTCTCCCGACTTAACCcctcttaatttttatttctggggTACCATGAAAAACATGGTTTACGCAACTGAAGTACGGACACGAAACGAGTTAATCACAAGGGTTTTTAATTGTGCAAACGCAATTAAAGAGAATATTTCGACAGTTcctttaaaaaggaatataagaaaaagagctctgctctgcatccaacgtgacggaggacattttgaaaatgttcttacaaattaa
- Protein Sequence
- MSQFTNAEYADMIYCYGLSNGNSMQARREYHQRFPHRRLPHHTVFQRTFQRLRETGSVQNITSSNRNDVSISVELEERLLEMVRNDPTTSTRRIARVTGLSQSTVWRVLNREDLYPYHMTPVHEILPQDRTNRKNFCSWLLEKDFDDDTFIDNIIWTDEAQFTKSGAINLHNLHVWSAENPNAARQADIQNFLDEMPLAQLGRIYYQHDGAPSHSERCMRNWLNENFGERWIGRNGPNPWPPRNDVSISVELEERLLEMVRNDPTTSTRRIARVTGLSQSTVWRVLNREDLYPYHMTPVHEILPQDRTNRKNFCSWLLEKDFDDDTFIDNIIWTDEAQFTKSGAINLHNLHVWSAENPNAARQADIQNFLDEMPLAQLGRIYYQHDGAPSHSERCMRNWLNENFGERWIGRNGPNPWPPRSPDLTPLNFYFWGTMKNMVYATEVRTRNELITRVFNCANAIKENISTVPLKRNIRKRALLCIQRDGGHFENVLTN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -