Vcin005184.1
Basic Information
- Insect
- Villa cingulata
- Gene Symbol
- -
- Assembly
- GCA_951394055.1
- Location
- OX596017.1:32695757-32698833[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 6.8e-08 3.5e-05 24.6 0.1 4 40 17 53 17 57 0.92 2 2 8.1 4.1e+03 -1.2 0.1 3 12 173 182 172 184 0.85
Sequence Information
- Coding Sequence
- ATGCCTAGAAGCAAAGAGGGCACAAAACGCGCTCCTGTTGATATAATAGCACTTAAAAAAGCAGTTACTGATGTGGTCGGAAATAAAATGAAGGTTTCCTCTGCAGCTCGCTACCATGGAGTTTCTAAAACAACTTTAATCCGGCACGTACAACTACACAAGAAAATGCAGTCAGATGAATTCCaatacatttcaaaaattacGAATAAAAGAATCTTCACCGATACTGAAGAAAATATGCTTGTGGAATATCTGAAAACCGCTGCAAGGCTTCATTATGAGCTTACCAAAATGGATCTCAGATCATTGGCGTATCAGTTTGGCCATGCTAATGGAAAACAAGTTCCCAGAAAATGGTCGGAAAACGAGAAGGCTGGTAAAGAGTGGTTACGATGCTTTCTATCACGTCATAAAGATCTCACTTTGAGAAAACCAGAAGCGACTAGCCTTGCAAGATCAACAGGCTTTAACAAGGCGaatATAGGCAGTGTAACTTCAGGTGAAAGAGGTGTTAATGCCACTATGATTGCAGCCATAAACGCAATTGGTAATCATGTGCCACCAATGTTGATATTTCCACGGGTTCATTTTAGGGATTATATGATGAAGAATGCTCCAGAGGGTTCTGCAGAAGCAGCCAGCCCCTCTGGTTggtcaaatgaaattttatttttaaaatatttcaagcATTTCATTGAATATGCAAAACCTTCTGTAGATCAAAAGGTTCTATTAATTCTTGACAATCATGAGAGCCATATATCAATAAGTGTTATTAATGAAGCGCGAGAAAAGGGAATAGTTTTGCTAACTCTCCCTCCACATACATCACACAAGCTCCAACCACTCGATAAAACTGTTTTTGGACCTTATAAGACTTATTATAATCTAGCTGCACAATACTGGATGTTATGCCATCCTGGAAAACCTATTTCAATATATGATATGGCCGAAATAATTGGACGAGCATATCCTCGGGCCTTTACACAAGAAAACATCACTCGAGGATTTAAAAAAACTGGAATTTGGCCTGTAGATCAATCTGTGTTCCTAGAACATGAATTTTTACCTTCAAATGTGTCAGACAGATCACCAccaaagaataaaaatgatgaaccctcaaataatttaaatggtTACACCTGTTCTGGAAATAATGGGGCTTCAGAACATAAGGAAAATGATAACACTCCTTCTATTATTGGTGAGACACAAGAGCCGCGAGCTTCCCACGTGACTGCAATTGTCTCTCCACATATTGTAAGACCATATCCTAAAGCAGGTCCAAGAAATCCTATACGGCAAAGGAAAACTAAAGCCAAAAATAGGATTTTAACAGACATTCCAGAGAAAaacgaaattgaaattaggaaggCTCGTGCAACACCATTTGAAAGGAAAAAAGTGAGACGCAACTTCTCTCGTGAGGGCTGTAGTGCTGCTCCAAATCCTGTTAAGACATGGAAATATTTCAATGAATTACAGTTTTTAGATAACTACAAAAGTTATAGAACTACAATTGGTAATCATCAAGAATCACAAGGAACATCTTTTGAAGAAGTTATTATTGATGACATAATTTCAGAAGAAAATACAGAAAACATCTTTGTAGAAAATTTAACTCAATCAACTTTGAGTACAGCATCAGAAGTACATTCAAGAGGAAAAAGGAAAATACAAAACGCCTCATATGAAGAGGAATTCAAAAAACTGTGCAAATTAGCATCTGATGTTATGAAATCAGTTCATGAATCTACTAGTTCATGTGAAGAGCAAACTACTACCACAGAAAATATACAGATATGCCAATGGAACCAAAAAtccgtcaccatataa
- Protein Sequence
- MPRSKEGTKRAPVDIIALKKAVTDVVGNKMKVSSAARYHGVSKTTLIRHVQLHKKMQSDEFQYISKITNKRIFTDTEENMLVEYLKTAARLHYELTKMDLRSLAYQFGHANGKQVPRKWSENEKAGKEWLRCFLSRHKDLTLRKPEATSLARSTGFNKANIGSVTSGERGVNATMIAAINAIGNHVPPMLIFPRVHFRDYMMKNAPEGSAEAASPSGWSNEILFLKYFKHFIEYAKPSVDQKVLLILDNHESHISISVINEAREKGIVLLTLPPHTSHKLQPLDKTVFGPYKTYYNLAAQYWMLCHPGKPISIYDMAEIIGRAYPRAFTQENITRGFKKTGIWPVDQSVFLEHEFLPSNVSDRSPPKNKNDEPSNNLNGYTCSGNNGASEHKENDNTPSIIGETQEPRASHVTAIVSPHIVRPYPKAGPRNPIRQRKTKAKNRILTDIPEKNEIEIRKARATPFERKKVRRNFSREGCSAAPNPVKTWKYFNELQFLDNYKSYRTTIGNHQESQGTSFEEVIIDDIISEENTENIFVENLTQSTLSTASEVHSRGKRKIQNASYEEEFKKLCKLASDVMKSVHESTSSCEEQTTTTENIQICQWNQKSVTI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01518882;
- 90% Identity
- -
- 80% Identity
- -