Vcin011463.1
Basic Information
- Insect
- Villa cingulata
- Gene Symbol
- -
- Assembly
- GCA_951394055.1
- Location
- OX596018.1:44379171-44381261[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 1.2e-11 6.2e-09 36.6 0.0 3 36 10 43 8 49 0.90
Sequence Information
- Coding Sequence
- ATGCCTTCAAAAACAGCGTATTCGGCAGAAAAATTAGCAGAAGCactcaacaaaataaaaaatgacaaaatttcgATTCGGGAGGCGAGTAGAATCTTTGATGTTCCACGAACTACTCTTCAGGACAAATTGAGTGGAAAACTTCCTGAGGGGATATCTAAGTTAGGACCTTCTACTGTTCTAACTTCTGCAGAAGAAAACAGAATAGTAGATTGGTGCATAGCACTAGTGAAATGTGGATTCCCAGTACAAAAAGATACTCTTTTAGATACTGTGCAGAAAATAGTAATCGAAGATGGCAGAAAAACACCATTTACGAATGGGAGACCAAGTAGAAAGTGGTTTGATTTGTTCATGAAACGTCATCCACAATTAACACAACGAGTCCCAGAAACATTAACCAAAAGCAGAGCTTTAGTAACTGAAGAATCTCTTCGAAAATGGTTTTCTAATCTGAAGATTTACTTAGAGAGCATTAATCAAGATAAAATATTGGAAGACCCAAGAAGAATTTTCAATGGGGATGAGACAAGTTTTGCTCTGTGCCCAAAAACTGGAAAGGTGATAGCACCAAAAggatttaaaaatgtatacgaaATCAAAAGCAATAACGAGAAAGAAACCATCACAGTTTTATTAACATTCGCAGCAAATGGTGAGACAGTAACTCCTCTTGTAGTATTCCCCTATCGTCGACCTCCCAAGGAAGTTGTTGAAAGTGTACCATCTGATTGGTATTTTGGACTGTCAGATTCTGGCTGGATGAAAACTGAAATTTTTTACGATTATATCGCAAAAAGTTTCAGTAAATGgatagttgaaaaaaatattgaaaagccagtgattttatttattgatggACATAAGTCTCACTTGAATATGGAAGTAAGTGAGTTTTGTAGTAACAACGGCATAATTCTGTATGCACTTCCACCGAATACTACACATATAATGCAACCTGCGGACGTAAGTGTGTTTAAACCACTAAAATGTGAGTGGAAAAAAACTGTGATGGAATGGCAACAAGCttcaaataatattgaaaatgtaacaaaaacaaCTTTCTGTCCTTTACTTGACTCCCTACTAAAAAAGAAAGATCTCACACAAAGTATTCGTAGTGGATTTCAAACGTGTGGGCTTTATCCGTTTAACCCAGACAAAGTTGATTACAGTAAATGCGTTGCAAACACAATTTCAAACTACGAAAAAGAACTTtctgatgaaaattttttgaatcgTTTGGAAACAACAAAAGAAACCATCACAATGATATCAGAAAATCTTGAATCTCGTGGTATTAATGTGAATATAATACTAGAggaaattgataaattaaaacaaaaaaatgtggAGACACCAGCTGAAAACCAACAAGAGTTGGTGGATGATAGTTTATGTGACTTATTTTCCGATCTACCATCAGGAACGTATAATTTAGAATTAGATGGAACTTTAATGGCAAATATCTTGAACTCCACTGACATCATTAATTTAGAATCACCAAAATCTAATTCAAAATTGCCATCGACGATAACACCCACAACAAAACGAATTATAGAAAACTTAGATTTTCCAATTTCTAATAATGCTATGTCTTTGAATTCACTTCATTCAAGTCCATCATCATCACGTGTAAGTTCTAGAAGAAATTCAAGGGAATGTTCACCTAGCTTATCCAAACATCTTTTACTGCCAGTTGTAAATCATCCTTCCAAACGCCATCGGAAAATGAATTATAGACCAAGTGCTATATCATCTTCTGAGTGGAGAAAAATTGAGATGGAAAAGAAAGcagaaaaagtagaaaaaacaaaaaaaatacaagaaagaAAAGCAGAATCgataagaaaaaaacaagaaaaactggACAAAATTAAAGGGAAGAAAAAAGCTAATCATACAAAAATTAACTGTTCAGTTTGTGATGAGGGCCTAATCAGCGATGTTGAAGAAGATGACCTGAAAAACGTTGGCTGTGATAAGTGCCCAAATTGGTATCACTTAAAATGCACACGATTTAAAACATTTGAAGAGgctattcaaaatgaattcatatgtGATAGATGTTGtcttattttgataaaatag
- Protein Sequence
- MPSKTAYSAEKLAEALNKIKNDKISIREASRIFDVPRTTLQDKLSGKLPEGISKLGPSTVLTSAEENRIVDWCIALVKCGFPVQKDTLLDTVQKIVIEDGRKTPFTNGRPSRKWFDLFMKRHPQLTQRVPETLTKSRALVTEESLRKWFSNLKIYLESINQDKILEDPRRIFNGDETSFALCPKTGKVIAPKGFKNVYEIKSNNEKETITVLLTFAANGETVTPLVVFPYRRPPKEVVESVPSDWYFGLSDSGWMKTEIFYDYIAKSFSKWIVEKNIEKPVILFIDGHKSHLNMEVSEFCSNNGIILYALPPNTTHIMQPADVSVFKPLKCEWKKTVMEWQQASNNIENVTKTTFCPLLDSLLKKKDLTQSIRSGFQTCGLYPFNPDKVDYSKCVANTISNYEKELSDENFLNRLETTKETITMISENLESRGINVNIILEEIDKLKQKNVETPAENQQELVDDSLCDLFSDLPSGTYNLELDGTLMANILNSTDIINLESPKSNSKLPSTITPTTKRIIENLDFPISNNAMSLNSLHSSPSSSRVSSRRNSRECSPSLSKHLLLPVVNHPSKRHRKMNYRPSAISSSEWRKIEMEKKAEKVEKTKKIQERKAESIRKKQEKLDKIKGKKKANHTKINCSVCDEGLISDVEEDDLKNVGCDKCPNWYHLKCTRFKTFEEAIQNEFICDRCCLILIK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01518831;
- 90% Identity
- iTF_01518829;
- 80% Identity
- iTF_01518829;