Vcin012605.1
Basic Information
- Insect
- Villa cingulata
- Gene Symbol
- bab1
- Assembly
- GCA_951394055.1
- Location
- OX596019.1:4532295-4534665[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 7.3e-13 3.7e-10 40.6 0.0 1 45 422 466 422 466 0.95 2 2 1.3 6.4e+02 1.4 0.3 4 20 564 579 563 582 0.92
Sequence Information
- Coding Sequence
- ATGACTACTAGCGAAGGACAAGCATTCTGTCTACGCTGGAATAATCATAAATCGAATTTAGTCGAAGTTTTAGATGCACTAATACAAAAAGAATGTTACGTTGATTGTACAATTGTTGTTGATGGTCAAGTACAATTTAAAGCACATCGTGTTGTATTAGCTGCAAATTCACCATATTTTCAATCAATACTACAAGATGTACCAATGGATCATTGCAGTATATTATTTCCTGGTGTACAACCATTCGAAATGCGTGCCTTATTAGATTATATGTATACGGGTGAAGTGAATGTGACACAGAGTCAAATAccgaaaataatgaaaattgctGAACAACTTGAAGTTAAAGGTCTATTCGATATGACAGatttaaaagagaaatttaataaattcgatGAAACAGCTACAATAccacatcatcatcaccatcatattcatcatcagcatcagcatcagcatcaacagcaacaacaacagcatcagCATCAGCATCAGCATCAGCAACATTATCAAACATCTGTACATACACCAATATCAACACCACCAATTTATGTCCCATCAAATATAAGTGGTAGTTGTGGTGGTAATTCAAATAAAGATGGAAATGGAAGAAGTGGTGATAGTGGTGGCGGTGGTAATGATGGAGGTTGTGGTACCAGTGGTATAAGTGCCATCGAACAACAACAATCTTCATCATCAATGATATCGACATCATCGAATGTAACACCAGCACACAGTAGTTCATCACCACCGTATACGCCTTACAAATCACCGTTCTCTAATATACATTCGAAAAGTCCAGGACCGTCGACATCAGATACAAAACATACGCAATGGCCACTTACTGCACATCTGCCTAGGTCATTATTGAGTTCAGTCTATGAGTCTGGAACTGATATGAATCCATTAAAACGTAAAAAATTACATTCGATTTCTAGTATGTTAATGTATAAGGATACACCTATACTCAGAAATGTATTACAACCTCATTCGTCTGTTGACTCATCACAATCAGTTCCACAAGTATGCCCTCAAATAAAACCTGAAAGATCAGAAAAACGAGAATCAGGAAATTGTAATGGGAAAGGAGATTATTCTGCAGATAAGAAACTAAAATATGAAGAACCAAATTCACCATACACAGACAAATCGTTTGAAGATGACGGTCTAGATTGCCCTCCCAGTTATCCTGGTGACCCACAATTACCTGGCTACgctcaacaacaacaacagaaaccAGAATGGAAACGATACAAACAGTACACAAGAACTGATATCCTATCTGCCATAGAATGCGTTCGAAATGGTATGAGTGCATTACAAGCTTCACGAAAATATGGTGTGCCTTCAAGAACATTATacgataaagtaaaaaaattgggTATTACTGCTGGCCGTCCAATGAATCGTACATTAAAACGAAGTCCAAGTAATGGTGGTAATTCAGCAAATTTTCCGTTCAGTATTGGAGGATCAAATAATCTGTATGGTAGTCAGAACGAGCAATTATTATCTCAAATGCATGAAAGCCAGTTAAGTGGAAGTGAACGAGACAAGGATCGAGAACATTCGCATTTACAATCGACAATACCTCATCCAGCAGCAGCTCTATTAGATCCATCATTTTTACAACAAGCACTTGAAGGACGTGGTGGTGATATCGCTGGTCGAGAAGCCTTACATGCAATGGCATTAGTTGCAGCCGCTCATTCTGCCGTGAATGGAATGTCAACAAGTCCTGGAGCGAATGGTTCTACACGATCACCTAGTCCCGGTATGCCAGTAAAATATATACGTTCACAAAGTTCACCTCCATCTCATATGAAATGTGAAATAGAAcaaattgatgatgatgaagatcgTGTTGAAGATTTATCGATTGGACGAAAAGAAATACGATCTCCATCACCACAGTCACAACAACAATcacaacaacaaccacaacGACCTCAATCATCATCACCATTACCACCTACTAGTAATCATCATTCATATAACATATCTGATGATCGTCATCGATCAGAATCACCCATCAGCGAATCACCACATCAACATCATCAGCAACGACAGGAATCTAACAATCAACTACAACAACCACAACAGCATCAGCAAACTGGTGTTATAGTGCCACCGATGACAAAACTTTCATCGAATAACGCAAATAATGACGAATACAACATTAAAATTGAACCGAATCGAGAATGTATAACGACAAATGAAGATTCCAGAGACTAG
- Protein Sequence
- MTTSEGQAFCLRWNNHKSNLVEVLDALIQKECYVDCTIVVDGQVQFKAHRVVLAANSPYFQSILQDVPMDHCSILFPGVQPFEMRALLDYMYTGEVNVTQSQIPKIMKIAEQLEVKGLFDMTDLKEKFNKFDETATIPHHHHHHIHHQHQHQHQQQQQQHQHQHQHQQHYQTSVHTPISTPPIYVPSNISGSCGGNSNKDGNGRSGDSGGGGNDGGCGTSGISAIEQQQSSSSMISTSSNVTPAHSSSSPPYTPYKSPFSNIHSKSPGPSTSDTKHTQWPLTAHLPRSLLSSVYESGTDMNPLKRKKLHSISSMLMYKDTPILRNVLQPHSSVDSSQSVPQVCPQIKPERSEKRESGNCNGKGDYSADKKLKYEEPNSPYTDKSFEDDGLDCPPSYPGDPQLPGYAQQQQQKPEWKRYKQYTRTDILSAIECVRNGMSALQASRKYGVPSRTLYDKVKKLGITAGRPMNRTLKRSPSNGGNSANFPFSIGGSNNLYGSQNEQLLSQMHESQLSGSERDKDREHSHLQSTIPHPAAALLDPSFLQQALEGRGGDIAGREALHAMALVAAAHSAVNGMSTSPGANGSTRSPSPGMPVKYIRSQSSPPSHMKCEIEQIDDDEDRVEDLSIGRKEIRSPSPQSQQQSQQQPQRPQSSSPLPPTSNHHSYNISDDRHRSESPISESPHQHHQQRQESNNQLQQPQQHQQTGVIVPPMTKLSSNNANNDEYNIKIEPNRECITTNEDSRD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01519457;
- 90% Identity
- iTF_01519457;
- 80% Identity
- iTF_01519457;