Vcin022550.1
Basic Information
- Insect
- Villa cingulata
- Gene Symbol
- -
- Assembly
- GCA_951394055.1
- Location
- OX596020.1:42212787-42214742[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 3.6e-14 1.8e-11 44.7 0.0 3 40 14 51 12 53 0.92 2 2 3.7 1.9e+03 -0.1 0.0 25 34 330 339 329 348 0.79
Sequence Information
- Coding Sequence
- ATGGAAAAAACAAAGAGATCAATAAAAATCGCAGATGCAGAATCAATGAATAAAGCTATATTTGAAATTCGAGAGAAAACATTGTCAATTCGAAAGGCTGCCGCAAAATATGATATTCCGAGGTCGACAATTCAAGATTATTTGAAGAGAGGATTGGATGGAGGTGAAAACAAAATGGGACCTGATCCGTATCtatcagaagaagaagaaaagaaaattgttgaATGGATCATTAATTTATCCAAATGTGCGTTCCCACTGAAATCAGATGATCTGCTTAACACTGTACAACAAATTATTGCAGACAGTGGAAGAAAAACTGCATTCAAAGATAACAGGCCAGGAAATCCAAGTCGTATTTTTAATTGTGATGAAACAAGCTTTTGTCTTTGTCCGAAAACAGGAAAAGTTATAGCACCAAAGGGCTATAAAAATGTGTACCAAGTGGCAAATTCTAACGAAAAAGACACTTTGACTGTTTTGATTACATTTAATGCTGATGGTAAAATATTACCACCAATGGTTATATTTCCATACGTAAGACCACCAAAGGATATTGTAAAAAGCATGCCAGAAAAATGGATTCTAGGACGGTCCGAAACGGGTTGGATGCGTATGCATTTTTGTGACAATAATGGGATCGTGTTATATGCTTTACCACCTAACACAACACACATTCTGCAGCCTGCTGACATAAGTGTTTTCAAGCCCCTGAAAACTGAATGGAAGAAAACCATTCGAAGTTGGCAAAATGAAAATGTTGGAACGGTCTTGACGAGGAAACATTTTTGCCCTTTGTTGGAAAAAGTACTGGAGAATAATCCGAGTTTGTCCACTACGATCAAGAATGGATTTCGCAAATGTGGTCTTTGTCCATTTGATCCAGATCTTGTCGATTATTCTAAATGTGTTAGAACAACTTTAACTGAAATCGCCGAACCGCAAGCAGATCAGCCACAAATGCCAACTTTATCAGCTTATCCTGACAAATACGACATCGCCAAATCTGTAATATCGGAACTATCTGTTAAGCTAAGAAATCATGGTTGTGACCCtgaattaattatgaaaataatttcagaAGCGTCTGAAAATCAAAAAACCAACACCAACACAGATGTTTCTACTACAGTTTTGGATTTGTCGGATAATATAGAACTTCCGTCAGGTATGTTATTTGAAATAACAGACGAGGGATTGCTTAAGGTGATAGAAGACATagagaaagaaaatttaaacatttcGACACAAAATGTAGAAACAGATTCTGAACCGTCAAAGCCGTTAGCAACTCCAACATCTTCCAGAAGCAGAGCATCATCAGTTTCATCTGTTTTAAATGATTACCTGTTTTATCCAAAATCAAGCGGATTTCcaagcaaaaataaatcaagCGGTTTAAATAGATCTCCTAGTGCTATTTCATCGCAGGTTTGGAGAGACATATACAACAGGAAGGAACAAAATAAGCTTATTAAAATGGAGCAAATAAAAGCTAGAAAAGAAGAACGTTTGGCTAAAGCACTTGCAAAGTCGAAAGTAATGGCTAAAAACACAAAACGGAAGCGTTCAATTAGGGAAAGATGCCAACATTGCTTTGAAGAATTGATTAGTGACGTGGAAGATGATAATCTCAAAAACGTAGGATGTGATTTATGTACTTCATGGTTTCACCTCAAATGTACAACATTAAACACTTTGTCTTACGATGAGGCACAAAACACACATTTCAAGTGTGAGAACTGCAATTCAAAGACCAATTAG
- Protein Sequence
- MEKTKRSIKIADAESMNKAIFEIREKTLSIRKAAAKYDIPRSTIQDYLKRGLDGGENKMGPDPYLSEEEEKKIVEWIINLSKCAFPLKSDDLLNTVQQIIADSGRKTAFKDNRPGNPSRIFNCDETSFCLCPKTGKVIAPKGYKNVYQVANSNEKDTLTVLITFNADGKILPPMVIFPYVRPPKDIVKSMPEKWILGRSETGWMRMHFCDNNGIVLYALPPNTTHILQPADISVFKPLKTEWKKTIRSWQNENVGTVLTRKHFCPLLEKVLENNPSLSTTIKNGFRKCGLCPFDPDLVDYSKCVRTTLTEIAEPQADQPQMPTLSAYPDKYDIAKSVISELSVKLRNHGCDPELIMKIISEASENQKTNTNTDVSTTVLDLSDNIELPSGMLFEITDEGLLKVIEDIEKENLNISTQNVETDSEPSKPLATPTSSRSRASSVSSVLNDYLFYPKSSGFPSKNKSSGLNRSPSAISSQVWRDIYNRKEQNKLIKMEQIKARKEERLAKALAKSKVMAKNTKRKRSIRERCQHCFEELISDVEDDNLKNVGCDLCTSWFHLKCTTLNTLSYDEAQNTHFKCENCNSKTN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -