Vcin024832.1
Basic Information
- Insect
- Villa cingulata
- Gene Symbol
- mynn
- Assembly
- GCA_951394055.1
- Location
- OX596021.1:22455678-22457068[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 3.1e-13 1.6e-10 41.7 0.0 2 41 256 295 255 299 0.89 2 3 0.14 72 4.4 0.0 27 37 326 336 305 341 0.90 3 3 4.8e-15 2.4e-12 47.5 0.0 5 38 364 396 361 401 0.94
Sequence Information
- Coding Sequence
- atgaataatttaaaatggatGGGCCACACGGCCACTGTAATGGAAATGCAAAAAAATCTACGACAAGACACTCAAACTTGCGATGTTTTAATATGTGCAAATGGATCTACAATGCAAGCACATAGATTCATCCTTTGCGCTTGTAGTGACTATTTCCGTGATATATTCCGTGATGTACCTATGGATAATGAGACAACAATTATTATTCCAGATCTTAAAAGCAACATTTTAGAAAGGGTACTAACATTCATTTATTTAGGTGAAGTTTGTGTTAACTCTTCACAACTATCAGACTTCTTAGAAAGCATTAATTTTCTTGGTATCAAAAGTCCAATAAGTTTTGAATGTCATTTGAATAAAGAAGAGAAAAATCTAGAAgatgattcaaataataatGAGGATAAGGAAATCGTccaacatgatgatgatGGAAGTACAGCAACAGATGCTTGCGGATCAAAGGATTTCGAATATTTGGAAGTGTATAATGACGATGAAAAAATTGATCAATATTCTATAGAACATATAGAACCAGAAACAAATAGTGACTATATAATAGAAAATCCACCTAATACGACTACATTCAATATAACTGAAGTTAAAGAATCGAATATTACGTTTAAAAATACGGAAACAGATacaaaagtttatattacaTCAGAATCGACAGTGGaacaattaaattttgataaagtTGAAACCGAAAGTAATGAGAATAACAAAACTAAAGATGAAATGGACATTAATGAATTAACACAATCTCGGAATGAATCTTTGGAATCAGCCGTGAAAGCTGTGATTGACGATGGTATGAGTTTACAAAAGGCCGCTAATAcatatcaaatatcaaaaacaGTGTTATGGAGACGCGTAAAAAAGAATccatattataaaatgaaaggGAATCCAATTATTGAAGCTGCAATTCAAAAACTAGCACAAGGCGAAACACTAAAAAGTGTCAGTATAGCATTAGATATACCACTATCAACATTGCACAggcataaaatgaaaatgtttcacGAAGGACGTTTACCAGATAATATATTAATCAGAAGAAAAGAATCAAGAGAAAGTTTAAACTTTAGATTGACTAATGCAGTCAAGGCATGTCGAGAGGGAATGAGTCAGAATCATGCATCATCAGTTTTTGGAGTTCCGAAATCAACACTATGGcgtcatttaaaaaaaatgagtgGGACAGGAACAGGAATGAAAATTGAAACTATTACAATCGGAAAAGACGATAATCAGTtaattgttgatgatgatgatgatgatgatgatgatgatatgtcTTTCTCGAGTTAA
- Protein Sequence
- MNNLKWMGHTATVMEMQKNLRQDTQTCDVLICANGSTMQAHRFILCACSDYFRDIFRDVPMDNETTIIIPDLKSNILERVLTFIYLGEVCVNSSQLSDFLESINFLGIKSPISFECHLNKEEKNLEDDSNNNEDKEIVQHDDDGSTATDACGSKDFEYLEVYNDDEKIDQYSIEHIEPETNSDYIIENPPNTTTFNITEVKESNITFKNTETDTKVYITSESTVEQLNFDKVETESNENNKTKDEMDINELTQSRNESLESAVKAVIDDGMSLQKAANTYQISKTVLWRRVKKNPYYKMKGNPIIEAAIQKLAQGETLKSVSIALDIPLSTLHRHKMKMFHEGRLPDNILIRRKESRESLNFRLTNAVKACREGMSQNHASSVFGVPKSTLWRHLKKMSGTGTGMKIETITIGKDDNQLIVDDDDDDDDDDMSFSS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01519475;
- 90% Identity
- iTF_01519475;
- 80% Identity
- iTF_01519475;