Vcin034447.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Villa cingulata
Gene Symbol
Mblk-1
Assembly
GCA_951394055.1
Location
OX596024.1:1581861-1598780[-]

Transcription Factor Domain

TF Family
HTH
Domain
HTH_psq domain
PFAM
PF05225
TF Group
Helix-turn-helix
Description
This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 2 8.4e-15 4.3e-12 46.8 0.0 1 44 330 374 330 375 0.93
2 2 8e-18 4.1e-15 56.4 0.0 1 43 786 829 786 831 0.95

Sequence Information

Coding Sequence
ATGGGACGCAGGAAATGGAAGCTCTATCAAGAAGTTCTTGCACGATCCCAATTGAATTTGAATCAAAACATTTCTGCAAGTCAGAACAAAAAATCCAATTCCTTTCAGCATTCAGAAAGAGACACATTGATTATAGATCAACAGAATACAGACCAAagtcatttgaaaaaaaacgaaatttctGCTATAAAGAAAGAGATCGGAGAAAATTTCGACGAAGAAAATTGTACATCGATAACAAaagAAGAGAATCAAGAAGAGAGATTAGCAGAGAGTTGTATAAGTAATTCAAGAACAATAAATACAAACATCACAGTTAAGCCATCAGAGTCACCAATTACATCATTACCAACAGTAGCTCCAATCGATTGGAAGCCGGACGAAAAGTGCTATTTTTGTGTTGACGGTAAACTTCTCACAGTGAACGAGAAAGGCGAATTAGTGGCCGAATCTGGCCCGGCTTCGTCCGAGGCAGAACTGGCCCACAGaACATCTGTTGATTCTGATAGTGATTCAAGTGATAGTTCACCAGATCTCGAATTACGTAATCAATCTGCATCAGCAGCAAGTGCTGttgcaacagcagcagcagcagctcAAATAGCGAACGTGCATAAAACTTTAACATCACGTCTTAGAGATTCACTTCCTCCGAATATGACCTCGTTTGAATCAATGGGTGCGCAAATGGCTGCCGTTGCTTCAATTCAAGGACTTCAGTCTGGTTTAAGTACATTTTATCcagGCATTTGGTACCACCAATTAGCACAACAACTAATGTCGGCTACCACAACTACCTCATCAGAAACACCTGCCGCCGAAAGTAGTCCTTCAATTAAAGACTCTCCTAGTCCCAGTGATACGGTCGGTGAACAGCCACTAGATCTTAGTGCAAAACCATCTCCAAATTCTTCAACTAGTGGtgatcaaaaacaaattttcagAGCAAAACCAAGAATGACAACCATATCGGGTCGTAGAACATATACTGAAGATAATTTACATAGTGCACTTCAAGATATAATTAGTGGTAAATTAGGTACAAGACGAGCTGCTGTTCTATATGGAATACCTAGATCAACATTACGAAATAAAGTGTATAAAATATCATTAGAGCAAAAACGTGAAACATCTTCTCTACATCAGCCGACAATTGATGAACTAGTCGATCCCGATGAAGAGGATAAGGATATCTCAGGTGATgaagaaaaagatgaaaaattgaTAGGAAGTTCCTTATTAGGTCAATCTGATGATCTTGCCCGAATAACACAATCACAATTAACATCACAACTAGCTGCAGCCGCCTTTCAAAAACTAAGCAAAAGTTGTGATAGCAGTCCTTTAGATGTAAAACCATCAACATCACTAGATGCTCAAACGAAAATGCAATCGAACGTTACgcagcagcagcaacatcaacaccagcaacagcaacaacagcagcaacaccAACAACAGCCACCCCAAACACCTCCAATAACAACAAATCCCTGGCTTGATCCAAATGTTTTATTCCAAAGTTTACTGTTAACTAGTGGTCTTAGTGGTATTCCAGGTTTATTACAGCCAAAAATTGAAGATCCTGCTGCTATTAGAGAATTATTTAGTAACCTGATGGTACAACAAGATGAACTgataaaagagcatatgaaaaataCAGCAGTAACAGCCAATGATTTGTTAGCAAATAGCAAGGCTGCAATCGATCCAAGAATTTTGTTACAAAATCTGCCTGGATTACAGCAACATCAACAGTCACAACATTCATTACATCATGGATTCCAGAGTCGTTTGCCAAAGTCTGATACGCCAGAAACAGCTTCGTCTGTCGATATTAGCGAAGCAAGTGATGATCCTTCAGTCATTTTAAAAATTCCGTCCTATAAGCCTGTAGCTGGATCTTCATCATCAGGGAAAAACGGAGAAAACTTAAGTTCTCCCGTTTCTCAAGTGACACCACCGATATTGTCGCGAAGTCCACAGCAAACGAATAATATACCAAGAATATCTCCAACATTAGTACGACAAAATAGTGAATCACAGTCACCTCCTATCATATGCCTAAGGGATGTAATTGCCAACAGTTTGAGTCGGACATTTAGTCAACAAGGGAACAAAGATACACATTCAAATGCATTAAAGGGTAGTTCATCCATTGATTCGAACGAACAGTTCAAACGAGCAAGTATATCAGTTATTAAGAACATCGGTGGAACGGATATATCTAGGTTTGCGACGACTCCAAATATCCTCGCTAATAATATCAATAACAGCTCTCAGGTAGGATGTAATAATTCTGCAAATGCTGGCGGTAAGGGAACTAGACCTAAGAGGGGGAAGTATAGAAATTATGACCGTGATAGTTTAGTTGAGGCTGTAAAAGCAGTTCAAAGAGGCGAAATGTCCGTGCATAGGGCAGGAAGTTACTACGGTGTACCTCATTCAACTTTAGAATATAAAGTAAAAGAAAGGCATTTGATGAGACCACGAAAACGTGAGCCAAAACCACAACCCTTAGATGATCGAGCAGGTAGTTCTAATAATAGTTCTGTAAGCACGAAAAACACAAACATTCCAAGCATAAGCGCAGTTAGTAGTTTAGATAAACTGAAGACATCGGCGACAACACAGAAGCCATCTATTAAGAATAACCCACCATTTCCAAGTACATCACCAAATGGCATGAAAGTGCCCATATTTGATCCAGCAATGACAGCTCAATTCCAATATGCACCGCACTTATTTTGGCCACATTCCACAGGCTTTGGAACTTTACCTATCGATTTTCAAAGACCACCAGCTGGAACAGCAGCTCCACCTTCATTCCCATCGAATGCAGAAGGCTTTCTAGCAACACAAATGATGCAAAGATTTCATGAAGAATCAAATCGACTAAGTGGAAATAGTTTAAGTTCAACAagtacaacaacaacaacttcAAACTCGGTAACAAACACGAAACCAATAAATTCTGGCACAAATTCAAATGTGAAAAGTACACGTCAAATAGCTGAAAGCCTATACGATTCTGGTGGAGCAAATGGTTCATTTTTAGATGGCATTATACGACAGACATTAGATCGTAAGACAACAGATATACCGCATGGTGCCCTTCTTGATCAGCTTGTTAAAAATACAAGACCTCCAGTTTTAAGTAGTAGTTTAGAGCAAcagttatcatcatcatcatcagcagcagcagcagcaacaacaacaacacatcAAACAAAGACCAAAAGACCTGGTAGCCCAGTACATTATCCTGTGATTGATATAAAAAGAGAACGTTCAAGTCCTGTAACAATAGTATCTAGTGATATTGATCGTAATCCAATAGATTGTGATTTAAAAATGGATGAtaaacagcaacagcaacaacaacaacaacttgCAATTCAACACCACCATACAGCAGCACTTCATTTActtcagcaacaacagcaacaattacaacaacaacaacaattatctGGGAATAGTATACGACATTTATCAATTGAAGATTTAAATGGCGGTGGTAGCAGTGGAAGTATTCACGATAAAATAGGACAAATTAAAACTGAACTCGAAGACAGTTTATAG
Protein Sequence
MGRRKWKLYQEVLARSQLNLNQNISASQNKKSNSFQHSERDTLIIDQQNTDQSHLKKNEISAIKKEIGENFDEENCTSITKEENQEERLAESCISNSRTINTNITVKPSESPITSLPTVAPIDWKPDEKCYFCVDGKLLTVNEKGELVAESGPASSEAELAHRTSVDSDSDSSDSSPDLELRNQSASAASAVATAAAAAQIANVHKTLTSRLRDSLPPNMTSFESMGAQMAAVASIQGLQSGLSTFYPGIWYHQLAQQLMSATTTTSSETPAAESSPSIKDSPSPSDTVGEQPLDLSAKPSPNSSTSGDQKQIFRAKPRMTTISGRRTYTEDNLHSALQDIISGKLGTRRAAVLYGIPRSTLRNKVYKISLEQKRETSSLHQPTIDELVDPDEEDKDISGDEEKDEKLIGSSLLGQSDDLARITQSQLTSQLAAAAFQKLSKSCDSSPLDVKPSTSLDAQTKMQSNVTQQQQHQHQQQQQQQQHQQQPPQTPPITTNPWLDPNVLFQSLLLTSGLSGIPGLLQPKIEDPAAIRELFSNLMVQQDELIKEHMKNTAVTANDLLANSKAAIDPRILLQNLPGLQQHQQSQHSLHHGFQSRLPKSDTPETASSVDISEASDDPSVILKIPSYKPVAGSSSSGKNGENLSSPVSQVTPPILSRSPQQTNNIPRISPTLVRQNSESQSPPIICLRDVIANSLSRTFSQQGNKDTHSNALKGSSSIDSNEQFKRASISVIKNIGGTDISRFATTPNILANNINNSSQVGCNNSANAGGKGTRPKRGKYRNYDRDSLVEAVKAVQRGEMSVHRAGSYYGVPHSTLEYKVKERHLMRPRKREPKPQPLDDRAGSSNNSSVSTKNTNIPSISAVSSLDKLKTSATTQKPSIKNNPPFPSTSPNGMKVPIFDPAMTAQFQYAPHLFWPHSTGFGTLPIDFQRPPAGTAAPPSFPSNAEGFLATQMMQRFHEESNRLSGNSLSSTSTTTTTSNSVTNTKPINSGTNSNVKSTRQIAESLYDSGGANGSFLDGIIRQTLDRKTTDIPHGALLDQLVKNTRPPVLSSSLEQQLSSSSSAAAAATTTTHQTKTKRPGSPVHYPVIDIKRERSSPVTIVSSDIDRNPIDCDLKMDDKQQQQQQQQLAIQHHHTAALHLLQQQQQQLQQQQQLSGNSIRHLSIEDLNGGGSSGSIHDKIGQIKTELEDSL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-