Vcin003845.1
Basic Information
- Insect
- Villa cingulata
- Gene Symbol
- -
- Assembly
- GCA_951394055.1
- Location
- OX596017.1:26585679-26595187[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 2.6e-09 1.3e-06 29.2 0.0 4 38 471 506 468 511 0.88 2 4 3.9e-13 2e-10 41.4 0.1 2 39 523 560 522 563 0.94 3 4 3.8e-17 1.9e-14 54.3 0.0 1 45 577 622 577 622 0.98 4 4 3.9e-17 2e-14 54.2 0.1 1 44 629 673 629 674 0.97
Sequence Information
- Coding Sequence
- ATGTTAAATTTATGCGACATTTTAAAATGTCGTTTTTATCATACAAATGCTTTTACTTATAGAACAACTACAgGTCTCTTGCGAACAGCTGAACAACTTAAAATCAAAGGTTTATGTGAAACAGCTGAAACAGTCGATGAAGTTATAACAGATTCATCAGCAACAATAACAGTACCAGAATCAACAACAATTCCATTATTATCATCGAATTCAAtcggtaataataataacaataataatttatcatcgcataatcaaaataataatagtgtacAACAACGTAAAACACGTGTAAGAAAACGTTCAAAATCaccagataataataattataatacatcaATTATCGGTAATACAAATCAAACATTTAATACTGGTACAattgttaatttaaattcaaatcaatcATCTGGTTCATCATCGACAATTACATCAGCTACACAAGTAGTAACTGGTGGCGGTGGAGGAGGTGGAGGTGGTGCAatagcatcatcatcatcatcaacatcatctgGTGGTGGtacaacatcatcatcagcaaTTTTAACACATTTCAAAACGGAGCATCAGGAGCAGTTAATAAGTCACGGTACCGATAGTATATCTAGTGATAATTCAGTtagtaaatcaaaaatttgtaaaacagAAGATTCATCTAATAATGGAGGGGGGATTGTAGCCCCTGGTACATCAATTGTAACACAAATTGTTGTTACACGTGATAGCAAAGATAAAAATATGACAAGTCTTGGAATGGGAatgAATGGTGGACTCTTAGGAGTGCCCATgggatttttagattttactcCAGAACCACCAGCACCATCAGCAACACCAGTCACTGAACATGTCGATATGTCATGCACTCCGAGCACAGATACAAGAGACTTATCAAATCCCACCGAAGCACTTGATATTGACAATCACATTGCACAGCATATTATTCAGCGGCTAGACCAATCACCAATACATCAAATACAACATCAGACAACTGTCgatgataataaaatgaatctAATACAGAATATAAAAAGTGAAGTTATTGAtgttaaacaacaacaacaacaacaacaacaacagcatatACAGCATCAACAGCAGTTACATAATCAACAACAGGGACAAtcacaacatcaacaacaacagtcACATCATCAAGATATAACTGGTGCAACGGTAATGGAAATCGATACAAGTAATATAAAGCATGAGCCTGGCATGATAATAACACCAGAAATTGTAACTATGATGACAACTGGACATATGGataTATATAATTCGGATACAAGTGAAGATTCATTAATGATTGCAAATGGATCACCAAATGATAACGGTGAACCACATTATACAAATTTAGATCAGCCAAATGATGAAAAAGGTCAGGCGAACGGGCCAAAAACATGGACACAACATGATATGATCTCGGCTCTAGAGGCATTAAAGAATCATAGAATGAGCCTGACGAAAGCATCTATTACTTATGGTATACCTTCGACAACACTTTGGCAACGTGCACACAGAATGGGCATTGATACACCTAAAAAAGAAGGAACGACAAAATCATGGAATGAAGAAGCATTGAATAATGCACTTGAAGCACTTCGTACAGGACAAATATCAGCCAACAAAGCGTCAAAGGCATATGGCATTCCGTCCTCGACACTATATAAAATTGCCAGACGTGAAGGTATACGATTGGCTGCACCATTCAATGCAGCTCCAACCACATGGACACCAGAAGATCTTGAACGTGCTTTAGAAGCAATTCGTGCTGGCCATACATCCGTCCAAAAAGCAAGCACTGAATTCGGTATACCTACAGgaaCATTGTATGGCCGTTGTAAAAGAGAAGGAATTGAACTTTCTCGATCGAATCCTACGCCTTGGTCTGAAGACGCCATGAATGAAGCTTTAGTAGCTGTTAGAATTGGTCATATGTCCATAAATCAAGCAGCAATACATTATAATTTACCGTACAGTTCATTATACGGAAGATTTAAACGTGGTAAATATGAAACAAGCGCGACGAATACATCATCATCGACAGCCAATAACAGCATAGAGATTATAGAACATAGTCCAGAGAATTCGTTTCATCTTTTCCAGCAGTTCCAGTATAGTCCAGGTCCGTCGAATACACAAACTcatcagcaacagcagcaaACCCATCATCAACAGATCCATATTCAGCAGCAATCTCAACATCAacagcatcatcatcagcagcaaCATTTACAACAACCGCAACAGCAGGATGTTGTAACATCATCAAGTCAAGTACATAGTCAAACAGGCCAGATACAACAAATATACCATCATAGTACACCAGAAAGAAGTTGA
- Protein Sequence
- MLNLCDILKCRFYHTNAFTYRTTTGLLRTAEQLKIKGLCETAETVDEVITDSSATITVPESTTIPLLSSNSIGNNNNNNNLSSHNQNNNSVQQRKTRVRKRSKSPDNNNYNTSIIGNTNQTFNTGTIVNLNSNQSSGSSSTITSATQVVTGGGGGGGGGAIASSSSSTSSGGGTTSSSAILTHFKTEHQEQLISHGTDSISSDNSVSKSKICKTEDSSNNGGGIVAPGTSIVTQIVVTRDSKDKNMTSLGMGMNGGLLGVPMGFLDFTPEPPAPSATPVTEHVDMSCTPSTDTRDLSNPTEALDIDNHIAQHIIQRLDQSPIHQIQHQTTVDDNKMNLIQNIKSEVIDVKQQQQQQQQQHIQHQQQLHNQQQGQSQHQQQQSHHQDITGATVMEIDTSNIKHEPGMIITPEIVTMMTTGHMDIYNSDTSEDSLMIANGSPNDNGEPHYTNLDQPNDEKGQANGPKTWTQHDMISALEALKNHRMSLTKASITYGIPSTTLWQRAHRMGIDTPKKEGTTKSWNEEALNNALEALRTGQISANKASKAYGIPSSTLYKIARREGIRLAAPFNAAPTTWTPEDLERALEAIRAGHTSVQKASTEFGIPTGTLYGRCKREGIELSRSNPTPWSEDAMNEALVAVRIGHMSINQAAIHYNLPYSSLYGRFKRGKYETSATNTSSSTANNSIEIIEHSPENSFHLFQQFQYSPGPSNTQTHQQQQQTHHQQIHIQQQSQHQQHHHQQQHLQQPQQQDVVTSSSQVHSQTGQIQQIYHHSTPERS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -