Vsat034956.1
Basic Information
- Insect
- Vesta saturnalis
- Gene Symbol
- -
- Assembly
- GCA_036346205.1
- Location
- JARFJB010000512.1:2096424-2097461[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 9 0.11 90 7.3 1.1 2 23 99 120 98 120 0.95 2 9 0.02 16 9.7 4.1 1 21 126 146 126 147 0.94 3 9 0.038 30 8.8 4.0 1 23 154 176 154 176 0.98 4 9 0.0006 0.48 14.5 1.3 1 23 181 203 181 203 0.96 5 9 0.024 19 9.4 1.4 2 23 209 229 208 229 0.96 6 9 0.034 27 9.0 1.6 1 23 237 259 237 259 0.96 7 9 8.2e-05 0.065 17.2 0.3 2 23 266 287 265 287 0.97 8 9 0.0014 1.1 13.3 0.8 1 23 294 317 294 317 0.97 9 9 0.0097 7.8 10.7 4.1 2 23 323 344 322 344 0.96
Sequence Information
- Coding Sequence
- atggaTAATGGTGGACCTTCAGTAGAAACTGATGAAGCGGAGCTTCGTGAAAAATCTGTTACAAATTTGGATTCAGAGTTATTAAAACAATCAACTAATGACGAATCTAGTGATATAGAAATGGTAACTTTGGATCCAAGTTATGAAGCCGAATTAGGACTGTTAGATGAtaatcttatacttataacaaatgaTGCTGATGCTATAGACTTTTCTTATACTGAACCGTCTAACTGTGTGGCAGAGATAAATGTTTCTAATACTGGAACTTCTAATGAAACCACATTGGGGATGAAGTGttttaaatgtgatttttataCTACTTTATTGGATGATTTCAAAAATCATATGGTCGAACATCCAAATGTGTTAGATTTTGTATGTATGCAATGCAATTATAGAACTAGAAATAGGCACCATTATTTTCGTCACTTGATCAGGTATTCATATACAGAGATGCACCAATGTGATTTGTGTTTATTTGGATCAAAGTATAAATCAACTTTATTAAAACATAGGAAATCACATGAAGAAGTTACATATAACTGCACTGCTTGTGATTTTACAAGTAAAAATAGGGGTAACTTACGGAGACATTATGCTCAACATGAAAAAACACTATTAAAGTGTGAACAATGTTCATATAGCAGTTCTCGAAAGAATATTGTTAAGCATTTAAGAACTCATACCAATTCTAATGATATGATGCATCACTGTAATGTTTGTCAATATAAATCAGCTACACTATCTGTTGTTGCTCGACATATGTTAATTCATATGAAAGTTGCTAAATTAGAGTGTGAAATTTGTGGTTATGTAACATCATATGCTCGTCTCTTAAGTAAACATACTAAGAAACATAAAGATGATGATGGCAACTATAAATGTGCATATTGTACTTATACAACGGATGATGGAGAAAATTTAAGATCACATTATGATACTTCTCATTATAAAAAGAAACTAAAGTGTAATCATTGTGATTATGTAACATATTATCGAAAAtcatttaattctcatttaaCTAACCATaagtaa
- Protein Sequence
- MDNGGPSVETDEAELREKSVTNLDSELLKQSTNDESSDIEMVTLDPSYEAELGLLDDNLILITNDADAIDFSYTEPSNCVAEINVSNTGTSNETTLGMKCFKCDFYTTLLDDFKNHMVEHPNVLDFVCMQCNYRTRNRHHYFRHLIRYSYTEMHQCDLCLFGSKYKSTLLKHRKSHEEVTYNCTACDFTSKNRGNLRRHYAQHEKTLLKCEQCSYSSSRKNIVKHLRTHTNSNDMMHHCNVCQYKSATLSVVARHMLIHMKVAKLECEICGYVTSYARLLSKHTKKHKDDDGNYKCAYCTYTTDDGENLRSHYDTSHYKKKLKCNHCDYVTYYRKSFNSHLTNHK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -