Vsat092679.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Vesta saturnalis
Gene Symbol
-
Assembly
GCA_036346205.1
Location
JARFJB010001486.1:112135-113751[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 13 0.026 21 9.3 1.1 1 23 157 179 157 179 0.98
2 13 0.012 9.8 10.3 4.7 1 23 185 207 185 207 0.99
3 13 1.5e-05 0.012 19.5 1.3 1 23 213 235 213 235 0.99
4 13 0.012 9.7 10.4 0.2 2 23 242 263 241 263 0.95
5 13 0.012 9.4 10.4 2.7 1 23 269 291 269 291 0.99
6 13 0.00089 0.71 13.9 0.9 3 23 299 319 297 319 0.96
7 13 5.9e-05 0.047 17.6 2.7 1 23 325 347 325 347 0.99
8 13 3.2e-05 0.025 18.5 0.2 1 23 353 376 353 376 0.96
9 13 0.0005 0.4 14.7 1.1 1 23 385 407 385 407 0.99
10 13 1.6e-06 0.0013 22.6 6.0 1 23 413 435 413 435 0.99
11 13 0.0001 0.082 16.9 1.2 1 23 441 463 441 463 0.99
12 13 0.15 1.2e+02 6.9 10.0 1 23 469 491 469 491 0.98
13 13 0.34 2.8e+02 5.8 1.1 3 22 499 518 497 518 0.90

Sequence Information

Coding Sequence
ATGGCCGAAAACATAAATGTTTGCCGAATTTGCCTAAAATTAATACCAACAGACGAAAGatcttattttctaaaattactagaacaaaaacttttagattgtttACCTGAAATTGATTTATCAATCCCAAGCAACCCTCTCGCATGTACACAATGCTTTGATGTAATAAAATCACTGCAAGAATTCAAACAGTTATGTTTACAAACGGAAAGCTTTGTCCAAAATTTACGACGTGAATCTATACCTTTCAAAGATATTTTACAACACCTTAAAACGACAGtgaaattagaaaatgatattaaagaagaagctaATCACTTAGAGATTGTTGATGATTCGTGCATCAATTTTAATACCGATATTCAGCTTGATATACATAAAACATataattgttttcattgtctgtATAAGAATAATAGTAGAAGACTTTTTCTTACACATGTACGATTACATAGAACAAAAAGTTGTTTTAAGTGTGATGTTTGTATTTACAGCACTCCCCATAATTTCGCATTAACAGCTCATAAGAAAATTCATTCAAATGAAAAACTGTTTAAATGCACCGAATGCAGTTATAGGGCTGTCAAAAAACATACGATTAAATCACATATGAGAAAACATGCAGTTGTCAAACCATACAAGTGTAATGAATGTAATTTTAGTACAGCGTATTCTGACAACCTTAAGATCCATCAACTCAAACAtgcaaatcaaaaattattacagTGCAATGATTGTGATTATCGTACAAATCGGAAAGATATTTTAGCATATCATGTTATGATACATAAAGATTTGAAACCATTTAAATGTACGAAGTGCAAGTTCAGTACTCGTGCCCGAAGTGTATTAAAAGGacacataaaaaaacataaaggaGAATTCTCTGACAATTGTGGTCAGTGTGAATTTAAAACTACAAGTAAGGCATTATTACGCTTGCATATGAGAAGTCACTCACAAGAGAAGCCTTACAAGTGTGATAAATGTAACTTCGCAACACGGCAAGCTTCGAATTTATATACACATAAGAAAACACATTCAAATGTGAAACCTTATCCATGTAATTCATGCAATTCTGCCTTTGCAAATAAATCGACATTAAACAAACACATATCGATTGTACACAATAAAACCCCAATTAAGAAACGATTTAAATGTGGTTATTGTAGTTATAAAACTGACACAAAACAAGCATTAGTTACACATGTTCGTATGCACACAGGTGAGAAGccttttaaatgtaatgtttgtGGGTATCGTTGTAGTCAATCACAACATTTAAGAATACATATGCGTACACATACTGGTGAAAAACCgtataaatgttcgaaatgtgaTTATGCTGCAGGGAATAAAACCACAATGCAATCTCATATGAGAACACATACTGGGGAAAAACCATATGAATGTGATCAATGCAGTTATTGCTGTGCACAGAGTCATTCTTTAAGTCATCATAAAAAGCTTCATTTGACCAAAGCTACAATCAATTGTAAAGATTGCAGTTTCAAAACTTTACGTAAGTTTGAGctgaaaaaacatttattaacatgtaaaaaataa
Protein Sequence
MAENINVCRICLKLIPTDERSYFLKLLEQKLLDCLPEIDLSIPSNPLACTQCFDVIKSLQEFKQLCLQTESFVQNLRRESIPFKDILQHLKTTVKLENDIKEEANHLEIVDDSCINFNTDIQLDIHKTYNCFHCLYKNNSRRLFLTHVRLHRTKSCFKCDVCIYSTPHNFALTAHKKIHSNEKLFKCTECSYRAVKKHTIKSHMRKHAVVKPYKCNECNFSTAYSDNLKIHQLKHANQKLLQCNDCDYRTNRKDILAYHVMIHKDLKPFKCTKCKFSTRARSVLKGHIKKHKGEFSDNCGQCEFKTTSKALLRLHMRSHSQEKPYKCDKCNFATRQASNLYTHKKTHSNVKPYPCNSCNSAFANKSTLNKHISIVHNKTPIKKRFKCGYCSYKTDTKQALVTHVRMHTGEKPFKCNVCGYRCSQSQHLRIHMRTHTGEKPYKCSKCDYAAGNKTTMQSHMRTHTGEKPYECDQCSYCCAQSHSLSHHKKLHLTKATINCKDCSFKTLRKFELKKHLLTCKK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-