Vsat151327.1
Basic Information
- Insect
- Vesta saturnalis
- Gene Symbol
- -
- Assembly
- GCA_036346205.1
- Location
- JARFJB010002068.1:994514-997381[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 31 2.7 2.2e+03 3.0 0.2 2 19 54 71 53 72 0.92 2 31 0.0011 0.86 13.7 0.5 1 23 80 102 80 102 0.98 3 31 0.048 38 8.5 2.4 1 23 108 130 108 130 0.94 4 31 0.00036 0.28 15.2 1.6 3 23 137 157 135 157 0.96 5 31 0.005 4 11.6 2.2 1 23 163 185 163 185 0.98 6 31 0.0076 6.1 11.0 0.8 2 23 191 213 190 213 0.94 7 31 0.0079 6.3 10.9 3.1 1 23 219 241 219 241 0.95 8 31 0.0023 1.8 12.7 0.8 2 23 247 268 246 268 0.97 9 31 0.077 61 7.8 7.0 1 23 276 298 276 298 0.98 10 31 0.00044 0.35 14.9 1.1 1 23 304 326 304 326 0.99 11 31 0.00034 0.28 15.2 1.0 1 23 330 352 330 352 0.99 12 31 3.1 2.5e+03 2.8 5.2 1 23 358 380 358 380 0.96 13 31 0.042 34 8.7 3.2 1 23 396 418 396 418 0.99 14 31 0.00078 0.62 14.1 1.5 2 23 424 445 423 445 0.96 15 31 0.0063 5.1 11.2 1.2 2 23 450 471 449 471 0.97 16 31 9 7.2e+03 1.3 3.1 1 23 502 524 502 524 0.88 17 31 0.078 62 7.8 5.4 1 23 530 552 530 552 0.97 18 31 0.1 82 7.4 7.5 1 23 558 580 558 580 0.98 19 31 0.013 10 10.3 3.0 2 23 588 609 587 609 0.97 20 31 0.076 61 7.9 1.7 2 23 616 637 615 637 0.97 21 31 0.1 84 7.4 2.5 1 23 645 667 645 667 0.98 22 31 0.013 10 10.3 3.6 2 23 673 694 672 694 0.96 23 31 0.081 65 7.8 4.6 1 23 700 722 700 722 0.98 24 31 0.15 1.2e+02 6.9 3.8 3 23 730 750 729 750 0.97 25 31 0.017 14 9.9 4.6 2 23 757 778 756 778 0.94 26 31 0.0019 1.5 12.9 1.4 1 23 784 806 784 806 0.98 27 31 0.0063 5 11.3 1.3 1 23 812 835 812 835 0.93 28 31 0.082 66 7.7 4.6 2 23 842 863 841 863 0.96 29 31 0.018 15 9.8 1.4 1 23 869 892 869 892 0.93 30 31 0.0017 1.4 13.0 0.3 2 23 899 920 898 920 0.97 31 31 0.00011 0.089 16.8 0.9 1 23 926 949 926 949 0.96
Sequence Information
- Coding Sequence
- ATGATTAAAAGTGAAAGTATTGATTTAGATGACAATTTATACAAAAACGAAGATGTAAAGCCCATACTAACAGCGGAATCATCAATTAGTAATGTCAAGCTAGAACCGTTAATAACAGACGAGCTTGATTTAAAAGAAACATTGATTAGAGTTGAATTAGTTTGTGATAAATGTGAATATCGGACATTCGAGAAAGAGGAGTTAAGTGCACACTTTCCGTTTTGTGATGGTAAACGTTTTAAGTGTGGCATTTGTAATTTTAAAGCAGATCGACAAGGGAAATTGAATAAACATATTGCTCGTCATTTTGGTGAAAGAAATTTTAAGTGTGATAAATGTGACTATAAAGGGTTCAGCCATTCAGCATTAAAAGATCACGAGTATGTACATGGGACCAAAAATCTGGCCTGTTATAACTGTGACTATAAGACGAATACaaagaacaatttaaaaaaacatatattaaaacatAACGATCGGGAATATTTTAAATGTGGAAAGTGTAGTTATTCCAGTAACGTTAAACTTAATCTTACCCGTCACGAACGCTATCATAATAAACcgataattaaatgtaatttgtgtGACTATGAATCGAAAAATTCACGCTATCTCAAAATTCACCGTGTTCGTGATCATGAGCATCTTAAATTATACAAGTGCGAGGAGTGTTCATATGAAACATATACGTGGTCTTTATTACACAGGCATAGTTTCAGTCATTCGACAGATTTTTTATACTGTAATAATTGTGAATATAAAAGTACTGTTAAGTGGAATTTAGTAAAGCACGTACGCCGCCATTTCTTAagtaaaaaagaattatttaagTGTTCTAAATGTACTTATTCCACAAAAAGTTATATTTACCTAAAACATCACAAATTGAAGCATACAggcttgaaaaattataaatgcaCCGAATGTGATTATGGCACGTACTTAAAGAGATTATTAAAGGCTCATATGTTAAAGCACGCTACTTGTTACCGATGTGGTGAATGTACTTATAAAACATATAACAGACGTCTTTTACAAATCCATATACGTATACACACTAACTTATTAAAATACCACTGCCATAATTGCAATTATGAGAcattgataaaaaataatctCAGAAAACATGTACTGAGACATTTACATTGTCGCTTATCACAATTAGCCAAGCATAATTCAAATCTTTACACATGCTTTCATTGTCGTTTTGTAACAGCCATAAGAgagtatttaaaaatacatttacgtAAACACGGCCCTCAcagaataaaatgtaatttgtgCAAGTTTAAAACGGCAAGTTCACAAAACCTACGCAGACATATGGTTTCGCACAAGCAAACATTAAAATGTAGAGTATGTAACTATACAGCTATAACGAAAACTGAGTTTACATCacatttaaaaatgcattttacagatcgttttgtttttaaaatgaaatacaatagatatcaaaaattaacacatCCTGCTTTTAAACTTAATTCTTCAACCGATGAATATGtgtgtaaattatgtaattataaaacaaatactgTGATTCGCTTTAATGAACATTGTCGTATTCatgattatacaaaaaaattttcatgtaaTTCATGCGAGTATTCTTGCAGAACAAAAGTACGGTTAAAAAAACATTCACTTAGACACTCGACTATAAAAAAGTATACGTGTACTCagtgtaattataaaacaacaCAAAAGAAATACTTAACTTGTCATATGAAAAATCATTCAAAAACTCTTGTCGTTGTTAAGTGTAATCAGTGTGATTACTCTTCACTTAATAAAGAGCATTTGAAAAGTCACTTAAAGTCACATTCTGATGAAAAATCGTTGCAATGTGCGATGTGTGATTACCGATCTAACAATAAAGCAACCTTAAGGTGTCATATTTTAACACACTTAATTGTTAAACCTaaatattacaaatgtgaccgatgCTCCTACAGTACTTATATGAAACCCAGATTAAAACGGCACAAATTAATACATGCtgataaaacaattaaatgtaaaatatgcgATTTTAAAACGAATCATCCCACTAAATTACGCCATCACTTAGTAATACACTCATTAGATAAAATGTTTACATGTAAATTTTGTGATTACAAAACTTATCGTTTAAAGGTGTTGCGGTATCACCTAAAAAAACATGACACCAGTACAAATGTTTTCTGCGCACATTGTGACTATAACACACAtataaaaagtgccttaatacgTCATCTTAAGAGACATGTAGAATCTAAGAATTTGAAGTGTCCTCACTGCGATTTTACAACGAAATATCAGCAGAGTCTTAGAACACATTCCTTTAAGCATGACCCTAAACATTTATATAAGTGTAACGAATGTGATTATTCCACCATTATTCGTAACAACTTAACTAGTCACTTCCTAAAGcacaataaagtaaaaaattttaaatgtgaagaaTGCGAATATACCTCAAGTCAAAAAAGCGCTGTTAAAACACATTTTCTACTTAAACATACAAAAGAAAAAGCTTTGAAATGCGAATtttgtgattataaaacaaatattaaatgcaatttaaaaaagcatcagGTTAAACATACGGGACAGAAGGATTTTCTTTGTGATCAGTGTTCTTATAAAGCAACTCAAAGCAGTTCATTGAAAACTCACAAATTAGTTAAACACACTGATAAAAAGAAATTGAAGTGTGAGGAGTGTGATTATGAAACGATGttaaaaggtaatttaaaaaagcatctgTTGGTGCATACGGGTAAGAAAGATTTTGCATGTACAGAGTGTAAGTACCGAGCAAGTCAGAAGAGTGCATTGAAAACACATATGCAGATAAAGCATTTAgatgaagattttaaataa
- Protein Sequence
- MIKSESIDLDDNLYKNEDVKPILTAESSISNVKLEPLITDELDLKETLIRVELVCDKCEYRTFEKEELSAHFPFCDGKRFKCGICNFKADRQGKLNKHIARHFGERNFKCDKCDYKGFSHSALKDHEYVHGTKNLACYNCDYKTNTKNNLKKHILKHNDREYFKCGKCSYSSNVKLNLTRHERYHNKPIIKCNLCDYESKNSRYLKIHRVRDHEHLKLYKCEECSYETYTWSLLHRHSFSHSTDFLYCNNCEYKSTVKWNLVKHVRRHFLSKKELFKCSKCTYSTKSYIYLKHHKLKHTGLKNYKCTECDYGTYLKRLLKAHMLKHATCYRCGECTYKTYNRRLLQIHIRIHTNLLKYHCHNCNYETLIKNNLRKHVLRHLHCRLSQLAKHNSNLYTCFHCRFVTAIREYLKIHLRKHGPHRIKCNLCKFKTASSQNLRRHMVSHKQTLKCRVCNYTAITKTEFTSHLKMHFTDRFVFKMKYNRYQKLTHPAFKLNSSTDEYVCKLCNYKTNTVIRFNEHCRIHDYTKKFSCNSCEYSCRTKVRLKKHSLRHSTIKKYTCTQCNYKTTQKKYLTCHMKNHSKTLVVVKCNQCDYSSLNKEHLKSHLKSHSDEKSLQCAMCDYRSNNKATLRCHILTHLIVKPKYYKCDRCSYSTYMKPRLKRHKLIHADKTIKCKICDFKTNHPTKLRHHLVIHSLDKMFTCKFCDYKTYRLKVLRYHLKKHDTSTNVFCAHCDYNTHIKSALIRHLKRHVESKNLKCPHCDFTTKYQQSLRTHSFKHDPKHLYKCNECDYSTIIRNNLTSHFLKHNKVKNFKCEECEYTSSQKSAVKTHFLLKHTKEKALKCEFCDYKTNIKCNLKKHQVKHTGQKDFLCDQCSYKATQSSSLKTHKLVKHTDKKKLKCEECDYETMLKGNLKKHLLVHTGKKDFACTECKYRASQKSALKTHMQIKHLDEDFK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -