Vsat170855.2
Basic Information
- Insect
- Vesta saturnalis
- Gene Symbol
- ZFY
- Assembly
- GCA_036346205.1
- Location
- JARFJB010002188.1:289934-291424[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.00088 0.7 13.9 9.7 1 23 148 170 148 170 0.99 2 11 0.0031 2.5 12.2 1.5 1 23 176 199 176 199 0.94 3 11 3.9e-06 0.0031 21.3 0.3 1 23 206 228 206 228 0.98 4 11 0.00031 0.24 15.4 3.6 3 23 236 256 234 256 0.97 5 11 2.2e-06 0.0017 22.1 0.2 1 23 264 286 264 286 0.98 6 11 1.4e-05 0.011 19.6 2.1 1 23 292 315 292 315 0.96 7 11 5.9e-06 0.0047 20.8 2.3 1 23 321 343 321 343 0.98 8 11 0.015 12 10.1 4.2 1 23 352 375 352 375 0.96 9 11 2e-05 0.016 19.1 1.9 1 23 381 403 381 403 0.98 10 11 1.6e-06 0.0013 22.6 0.8 1 23 409 431 409 431 0.96 11 11 2.1e-06 0.0017 22.2 2.7 1 23 437 459 437 459 0.96
Sequence Information
- Coding Sequence
- ATGACGACTACAAATACTAGtatttataatttagattttaatacaatttgtagaGTATGTCTTCTTCCATCTGAAAAAATGCAATCTTTATTTGAAACTGGTAgtgcaaaattaattatggaATTAGCTGCTATTGAAGCTAACGAAACAGATGGCCTACCTGAAAATTTATGTGATAACTGTGTAACACTTTTACAACAATGTCTcacttttaaagaaaaaattaaaacatcagatCAAATATTGAGGAACTGTTTACTACAAAACATTAATGAAAGTGTCCAAACAAACCACCAGAAAAATATAAACAATGAAAAAAGTGAGGTGCACAcagacataaaaaaacaaaaagtaaaaaaaattaaaaattcagaaaTGGAACTTGCTTTAGCCAAATTGAAAAAGTCAATTCCTTCTTCGTTTTTTACAGAAAAGAATTCTTTTAAATGTCACATTTGTGAAAAACACTTTAAATGTAGAGCACAATTAACACGACATCTTAAAACTCACACAGGTATACGTAGTCATGTTTGTCAAGCTTGTGGCAAATCATATATGGAATCTGGGTCATTACgtaaacattttttatcaaaACACTCTAATAGGAAGAAACCTTACAATTGTCCTGAATGTAAGCTAGGATTCGATCTTCGATCAACATTAATTAGGCACATTAGAACACATACTGGCGAAAAACCATTTGGATGTGAATTTTGCCATAAATTTTATCCTTCTAAATCctatttaaataaacacaaaaagATACATGTTGGTACACGTGATAAATCCTTCATTTGTGAAATTTGCAGCAAATCTTTTACATTAAAAGATGGTTTGAAAGCACATTTAATTACACACTCAAATGAAAAGCCTCataagtgtgaagtgtgtgaCAAATCATTTTCTATGAAAGGGTCACTACTGTCTCATACCAAATATATTCATACAAAAGAAAAAGATTTTATGTGTCAAGTATGTGCTAAAACATTCGTTACCCAATGTGAATTAAATGAACACATGCGAAGGCATACTGGTGAAAAAAAAGAACCAAAACATGTTTGTGTTATGTGCAATAAGAAATTATCATCCTCTACACATCTTAAATTTCATATTCGTTCAGAGCACACAGGAGAAAGGCCATACAATTGTAAATTCTGCACAAAATCATTTATAACTGCTCAAGCATTAAAGATTCACACTAGGTACCACACAGGTGAAAGACCATATTTATGTAACTATTGTACAAAAAGCTTTGTGACAAATGAAAGCTTAAAGGTACATGAAAGAATTCACACAGGTGAAAAACCATTCTTATGTACATTATGCAACACTTcatttagccaaagcagtacattaaaaacacatttaaagacacatatgtaa
- Protein Sequence
- MTTTNTSIYNLDFNTICRVCLLPSEKMQSLFETGSAKLIMELAAIEANETDGLPENLCDNCVTLLQQCLTFKEKIKTSDQILRNCLLQNINESVQTNHQKNINNEKSEVHTDIKKQKVKKIKNSEMELALAKLKKSIPSSFFTEKNSFKCHICEKHFKCRAQLTRHLKTHTGIRSHVCQACGKSYMESGSLRKHFLSKHSNRKKPYNCPECKLGFDLRSTLIRHIRTHTGEKPFGCEFCHKFYPSKSYLNKHKKIHVGTRDKSFICEICSKSFTLKDGLKAHLITHSNEKPHKCEVCDKSFSMKGSLLSHTKYIHTKEKDFMCQVCAKTFVTQCELNEHMRRHTGEKKEPKHVCVMCNKKLSSSTHLKFHIRSEHTGERPYNCKFCTKSFITAQALKIHTRYHTGERPYLCNYCTKSFVTNESLKVHERIHTGEKPFLCTLCNTSFSQSSTLKTHLKTHM
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -