Vsat174234.1
Basic Information
- Insect
- Vesta saturnalis
- Gene Symbol
- -
- Assembly
- GCA_036346205.1
- Location
- JARFJB010002216.1:540618-550099[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 24 8.8e-06 0.007 20.2 0.2 2 23 57 78 56 78 0.96 2 24 0.23 1.9e+02 6.3 2.2 1 23 82 104 82 104 0.97 3 24 3e-05 0.024 18.6 0.4 1 23 139 161 139 161 0.97 4 24 7.6e-06 0.0061 20.4 0.4 1 23 167 190 167 190 0.97 5 24 0.00037 0.29 15.1 4.4 1 23 201 223 201 223 0.97 6 24 0.00015 0.12 16.4 0.9 2 23 229 250 228 250 0.97 7 24 0.0024 1.9 12.6 2.0 1 23 256 278 256 278 0.96 8 24 5.7e-06 0.0045 20.8 0.6 1 23 284 306 284 306 0.98 9 24 0.74 5.9e+02 4.7 0.0 3 23 395 415 393 415 0.91 10 24 0.00048 0.38 14.8 1.7 1 23 435 458 435 458 0.96 11 24 2.2 1.8e+03 3.2 1.0 6 23 466 483 462 483 0.94 12 24 0.00024 0.19 15.7 3.6 1 23 489 511 489 511 0.98 13 24 0.00061 0.49 14.4 0.4 1 23 517 540 517 540 0.97 14 24 1.6e-05 0.013 19.4 1.8 2 23 550 571 549 571 0.98 15 24 0.00011 0.089 16.8 1.9 3 23 579 599 578 599 0.98 16 24 2.8e-06 0.0022 21.8 0.7 1 23 605 627 605 627 0.96 17 24 2.9e-06 0.0023 21.7 2.4 1 23 633 655 633 655 0.97 18 24 0.23 1.9e+02 6.3 0.1 1 13 661 673 661 676 0.82 19 24 0.14 1.1e+02 7.0 6.2 1 23 682 704 682 704 0.97 20 24 0.14 1.1e+02 7.0 1.0 1 21 863 883 863 884 0.95 21 24 0.018 14 9.8 0.2 2 23 891 913 891 913 0.93 22 24 0.012 9.6 10.4 1.5 3 23 919 939 918 939 0.97 23 24 0.012 10 10.3 4.7 1 23 945 968 945 968 0.96 24 24 0.00011 0.085 16.8 1.8 1 23 973 995 973 995 0.98
Sequence Information
- Coding Sequence
- ATGTCTGAAGGGGAGATGGAGATGGATAATCCTCTTGAGTTGAAATTTGTGTGTCATGTCTGCAAAACTGAGGATAAGATGACTGAGAAGCAATTACGTCAGCACTTTCGAGAAATTCATAAAGGAAAAAGACTGAGGAGTATGAAATTACACATGGAAAGCGCGCTTCCGTGTGATGTTTGTCCAAAATATTTTCGTTCTGCGAAGAGTCTGAAGGAGCATATGGAGACGCATAGCAATCAGTTTAACTGCGAGATGTGTACTGCTCATTTTAAGAAGATCCTTGATTATACTCTTCACTTAAGACTTCACTCGGAGGAGAATGTGTTTAAGTGTATATTATGCGAGTTTAAGACTGATTCTATTAACGATATTACTGATCATTTGAATAATACGCACGAGAAAAACCATAAGTATAAGTGTAGTAAATGTGGAAAAGGTTTTAATGTGGAGTCGTGGCTACAAGAGCACGAGAATTATCACTCAGGGACGAAACCGTTCGAGTGTGAGTTTTGTGGAAAATCTTTTCCGTATTCGAGATATTTGATTGCGCATCGAAATTCTATTCACAAGGATGAGTTTATACGCACGTCGAATTTGCATGAGTGCGTGATTTGCAAAAAGTCCTACCAGCATAAGAATAGCCTAAAACTGCACATGAATGTCCATACGGGAAATGTTTCTGTTTGTGACATTTGCGGAAGAACTTTGTCGAGTAAGGAAAAGTTGAAATTTCACATGCGCACCCATACTGGTTATAAACCGTTCAGTTGCTCGTTTTGTGGTAAATGTTTTACGAAAAAACCGATTTTGGTTGAGCACGAGCGGATTCATACTGGAGAAAAGCCGTATTCGTGCGAGTTTTGCTCGCGAGGTTTCTCACAACGATCCAGTTTGGTTATACATATGCGTGGACATACTGGTGAGCGTCCaaatattaaaGAGGAGAAGAGTGTTACCTCCCAATGGTCAAATAGACTACCGGAAATTGACATAATGCCAGTTCAACCTCAGAATGTTGGCTACACTATTCCAGATCTAAACTACAACGCAGAAGATAATAGTAAAAGATTAACAATGGCCGAAATGGGGTATAAAAACCCGTTCAACTACACAAGTTGCCACATTCAAGCAAAGTCTAAGTCTACGAAGCAAATTGACGCAAATGCAAACAAGTGGACGTGCATTATTTGCAGCGAGGCTCTAGCggataaaaaatctttaattgatCATTACGAAAGTCATAAGAACGAACTTGAAAGCAAAACTGATAAAATTCAGTCTCATAAACTAGAGGATTATTTTAAGTGTGTTGTCTGTACGAGAGAGTTTACGTCGTCTAGAAGTTACGAGAAGCACTTGGAGAGTAAACATGGTGAGAATAGGTGCATCGCTTGCAATTTTATCACTAATCATCGAGCTGATTTAAAATTGCACATTGCTAAACACGAAGGTGATTTTAACCATCAATGCGATATATGCGACAAAAAGTTTATCTCTCAACACTTACTGGACGAACATAAAAATTCACACACCGGCGCTATGCCTTTTCAATGTGAAATATGCTACATCAGCTTTCCTTACGCACGTTACCTGATCTCACATAAGAAAAGCGTTCACTTAGATACTTACAAATCGGTTAGCAATAAATGTGAGGTATGTGATAAGCAATTTGCTCATAGAAAAAGCTTGATTTTGCACATCAGATCGCACACTGGTGAAAACACTGTCTTGTGTGAAATGTGCGGTAAACGCCTTTCGAGCACTGAGCATCTCAAACAGCACTTACGTATTCACACTGGTTATAAACCTCACGCATGCTCAGTTTGTGGCAAGGGCTTTGCGAAGAAAAGCAATTTAACGTTACACGAACGTGTGCATAGTGGTGAAAAGCCGTACATTTGTCGCGATTGCGGTAAATGTTTCTCACAACGCTCAACTTTAGTGATACACGAACGATACCATTCTGGTGAAAGGCCTTATAGTTGTCCATTGTGCAATAAAGGATTTGTGGCTAAAGGTCTATTAGGCTTCGCGGAAACTTTTCGATGTTGCCGTTGTGAGGAACACTTTAAAACTACAACAGATCTCTATAATCACTATGAAATTCATAAAGGCAGTTCCGGCGTTATAGTCGAAAAATTGGTCGATGTCGAATATATGGAAAATTCGACTAACGACCTTTTATACATTTTGGATAATTCACAATGCATAAACGAAGTTGTTATTGAGGATGAAGGTGAAATTCGCGAAATTGATTCTGAATCGCCTCCTTCAGTTAAATCTGAAACGAAAGACGTTGTTAGGGTGGAGCATGTTGAACATGGTTATATGTTACCTAGTGTTTTTAAGGGACAGTTGGAGAGTAAAAAGCGGTATAAGAGAAGAGAATTGGACGCGTCTACTGTTGAAAGTTTAGCTGAGGAGGAGAGTGCAATTGAGGCAATATTGACAACCGAAGCGACCTCTAGTAAGATCTCACCAGCTTTACCGAAATCAAGACCGAAACGCCGTCACGAGGTTCCGGATTTTTCAGCTACTAATTATATCATGTTGAATCCAACGGAGGAGCTTGATATTGTTCATTATAAATGCTTGCGGTGCGAGCAGTTGTTTATTAGCAAATTTGGATTTTTTAGGCATATCGAAAAAGGAAGGTGCTATATTAATAGTTGCGATGTGTGTAGTGCGTCTTTTAATAAAAACAGCGAGTTTTATGATCATTATATGGCCGAGCACACAGACCGAgcgatttgtaatttttgttttcggACTTTTATGTATGAAAAGAATGTGAAGGAGCATATGTTAAGGCACTTGGATCAGTTTAGGCATCGTTGTGAACAGTGTAATAAAGGATTTTATACAGTACGTGAATATAGGAATCATTATAAAAATAGGCATATGGGTATAAGACATAAGTGTGGAGTTTGCAGTCGATCGTTTGCggatgaatattattttaaaaggcaTGTCGCTACACACGAAAAAGCTTTAGCTTCAAAAGTACAATTATCAATTTAG
- Protein Sequence
- MSEGEMEMDNPLELKFVCHVCKTEDKMTEKQLRQHFREIHKGKRLRSMKLHMESALPCDVCPKYFRSAKSLKEHMETHSNQFNCEMCTAHFKKILDYTLHLRLHSEENVFKCILCEFKTDSINDITDHLNNTHEKNHKYKCSKCGKGFNVESWLQEHENYHSGTKPFECEFCGKSFPYSRYLIAHRNSIHKDEFIRTSNLHECVICKKSYQHKNSLKLHMNVHTGNVSVCDICGRTLSSKEKLKFHMRTHTGYKPFSCSFCGKCFTKKPILVEHERIHTGEKPYSCEFCSRGFSQRSSLVIHMRGHTGERPNIKEEKSVTSQWSNRLPEIDIMPVQPQNVGYTIPDLNYNAEDNSKRLTMAEMGYKNPFNYTSCHIQAKSKSTKQIDANANKWTCIICSEALADKKSLIDHYESHKNELESKTDKIQSHKLEDYFKCVVCTREFTSSRSYEKHLESKHGENRCIACNFITNHRADLKLHIAKHEGDFNHQCDICDKKFISQHLLDEHKNSHTGAMPFQCEICYISFPYARYLISHKKSVHLDTYKSVSNKCEVCDKQFAHRKSLILHIRSHTGENTVLCEMCGKRLSSTEHLKQHLRIHTGYKPHACSVCGKGFAKKSNLTLHERVHSGEKPYICRDCGKCFSQRSTLVIHERYHSGERPYSCPLCNKGFVAKGLLGFAETFRCCRCEEHFKTTTDLYNHYEIHKGSSGVIVEKLVDVEYMENSTNDLLYILDNSQCINEVVIEDEGEIREIDSESPPSVKSETKDVVRVEHVEHGYMLPSVFKGQLESKKRYKRRELDASTVESLAEEESAIEAILTTEATSSKISPALPKSRPKRRHEVPDFSATNYIMLNPTEELDIVHYKCLRCEQLFISKFGFFRHIEKGRCYINSCDVCSASFNKNSEFYDHYMAEHTDRAICNFCFRTFMYEKNVKEHMLRHLDQFRHRCEQCNKGFYTVREYRNHYKNRHMGIRHKCGVCSRSFADEYYFKRHVATHEKALASKVQLSI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -