Vsat174236.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Vesta saturnalis
Gene Symbol
-
Assembly
GCA_036346205.1
Location
JARFJB010002216.1:551518-566561[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 21 6.7e-06 0.0054 20.6 1.7 1 23 13 35 13 35 0.99
2 21 0.00061 0.49 14.4 4.1 1 23 45 67 45 67 0.98
3 21 0.00028 0.22 15.5 0.1 1 23 74 96 74 96 0.97
4 21 2.2e-05 0.018 19.0 1.2 2 23 103 124 102 124 0.97
5 21 1.7e-07 0.00014 25.6 1.9 1 23 130 152 130 152 0.99
6 21 9e-05 0.072 17.1 2.1 2 23 188 209 187 209 0.97
7 21 0.00058 0.47 14.5 1.3 2 23 226 247 225 247 0.96
8 21 4.4e-05 0.035 18.0 0.2 3 23 272 293 271 293 0.98
9 21 0.078 62 7.8 2.2 1 23 297 319 297 319 0.98
10 21 0.013 10 10.3 1.9 1 23 330 353 330 353 0.97
11 21 6.1e-05 0.049 17.6 0.2 1 23 359 381 359 381 0.97
12 21 0.00059 0.47 14.5 3.4 2 23 387 408 386 408 0.98
13 21 0.074 59 7.9 1.4 2 23 512 533 511 533 0.91
14 21 0.012 9.6 10.4 2.4 1 23 537 559 537 559 0.98
15 21 0.034 27 9.0 2.7 1 23 565 587 565 587 0.90
16 21 1.1e-05 0.0087 19.9 3.6 1 23 593 616 593 616 0.98
17 21 0.0013 1 13.4 8.0 1 23 628 650 628 651 0.96
18 21 0.0025 2 12.5 0.6 3 23 661 681 660 681 0.98
19 21 6.1e-07 0.00049 23.9 0.8 1 23 687 709 687 709 0.98
20 21 2.3e-06 0.0018 22.1 4.7 1 23 715 737 715 737 0.99
21 21 0.13 1e+02 7.1 0.1 1 21 743 763 743 764 0.88

Sequence Information

Coding Sequence
ATGAAACCCCATCTAGCAAGACACAATAACGTACTATTCACATGCGAAATTTGCGGAAAGCCTCTTCGCGATAAACATTCACTAAATCttcacacgaaaacacacaatgACAATTACACATCTAATAAGGAATACAAATGTAACATCTGTAACAAGGCTTACCATTTCAAAACAACTCTTCTTAGCCATCAGAAAGAGCATGATCGTGGGAAACTGTTTTACGCTTGTGATGTTTGTGGAAAATTACTAGCGAGTAAGAAGAGTTTACAGTCACATTTATTAATGCACGAAGGATTAAAACCGCTTAAATGCGGGATTTGCGAAAAAAGTTTTGCTAGTGGACATAGCCTTAGAGTTCACACACGAACTCATACTGGAGTAAAACCTTAccgttgtgaaatttgtgttaaatcTTTCACTCAACGATCATCTTTAACCATGCATATGAGATACCACACTGGATCCTCCGAGGATGAATCAAAACCTGTTAATCTAAACAGCGAAATATTAGGAAATTTGAACACATCCCCTATTCGTACATTCAAACGTGAAATACTCTGCAAGTGCAACGTATGCGGGAAAGTTTTAAAATTCCCCGAAACTTTTAACGAACACATGAAGAGCCATGTTAAACCAGCTATTGCCGAAACTTCGAATCAGCAAAAAGAACCTTGTAACTGTAAAGTGTGCGGAGAAACAATTACATTCCCGGATAGTTTTAGTAAACACATGCAAGTGCACGCTCGAAATTCTGAtcatttgaattttgaatctaaaaatgGCAGCGTGCGATTTGGTGGATACTCAGTCTTGTGCCCAACTTGCGATTTGGTTTTTTATACCAGATCGGATTTTATAAAACATGTGAATACTGTGCATAAGAGGACGTATGAGTGTGATATTTGTAAGATGAGTTGCGGAAATTATATCAGTTTCAGTCTTCATAAACGTTTGCATAGTCGAATTAAGAAAAATGTTGTTTCTGGTTACAAATGTGTGGAGTGTAATGTTGAGTGTGCGTATTTAAATGATTTGCGTCATCACACCAAGATTGCGCATAAACGTGTTTCGGAGTTTACTTGCGACGTTTGTCAGAAAGTGCTATCCTCAGCTGCAAACCTTCGAGTCCATAAGGCTAAACACACGCAAAATCCTAATAAGTGCACTTACTGTAGGAAATCAATTACTAAAAAGGGCTTTCTTAAAAGGCACATACAGAAACACATTGATCTTGGAGAAAATTCGAAAGCAATATACGGTGAAAGTAATTCCATAATTGGACGGCTGGTATACGGACCATCGATGTCTGTCACGGTTTGCTCGCCACCTGAAATTAAACAAGAGAACACGTACGATTCGTATTGTGAAATAAACGATACTCAAAATTTGCTGTACATGCAAGTACCAGAGGAGAAGGAAGTGGTAAATCCGGGTAGTACTACTTCAGTTTTGCCATTAAAACGAGCGGTGAAGGAAAGAAGGGCTGCTATGAAAGAAACCCAGAAATCGAAAAAAGATAATCCTGAGGCGATCCATTGCGAAATTTGTGAAAAGAATTTTCGCAACAATCTCAGTTTTGGTTTACACTCgataaaacacaataataagtATTCTTGTCATATTTGTGAGTACAAAACTGTGATCAGGAATAAGTTTGAACGGCATATTAAGATTCACGAAGGTACTAATGGGTATAAATGTGAAATGTGCGATAAGCACTTCGCTGTCGCCAATCACGCCTTAGAGCATCGATATTTCCATACGGGCGAGAAACCGTTtcagtgtgatgtgtgtgggaaACACTTCACTTATTCTCGATTTCTCAACGCTCATTACCGCAGCCAGCATTGCACTATACAAACTGGTCAGGCCCGTAAGCAATACACTTGTACACTTTGCGATAAGCATTACATCTCGTGTACCGGTCTCACCCGTCACCAGCAGCGTCACCACACCGTCGGGTTTGACCAATCAAAACTGTGCGATATTTGCGGGAAACGTCTTGCTAGCAGAGACCAGCTAAAGTTTCATCGCAGAATTCACACCGGCGACAAACCTTACTCTTGCGAGGTCTGCTCGAAGAGCTTCACTCGAAAGGATTTATTACGTGAGCACGAACGAGTACATACAGGCGAGCGACCCTACACTTGCCAATACTGCAATAAATGCTTCACGCAGCGATCTCCATTAAAAATCCACGAACGAACGCACACCGGAGAAAGACCTTTCGAATGTCTAATGTGTAAAAAAACCTTCATCGCTAAAGGCATACTCGGTGCACACATGAAGAAATGTCAGGGGATTAAAgatagcaaatag
Protein Sequence
MKPHLARHNNVLFTCEICGKPLRDKHSLNLHTKTHNDNYTSNKEYKCNICNKAYHFKTTLLSHQKEHDRGKLFYACDVCGKLLASKKSLQSHLLMHEGLKPLKCGICEKSFASGHSLRVHTRTHTGVKPYRCEICVKSFTQRSSLTMHMRYHTGSSEDESKPVNLNSEILGNLNTSPIRTFKREILCKCNVCGKVLKFPETFNEHMKSHVKPAIAETSNQQKEPCNCKVCGETITFPDSFSKHMQVHARNSDHLNFESKNGSVRFGGYSVLCPTCDLVFYTRSDFIKHVNTVHKRTYECDICKMSCGNYISFSLHKRLHSRIKKNVVSGYKCVECNVECAYLNDLRHHTKIAHKRVSEFTCDVCQKVLSSAANLRVHKAKHTQNPNKCTYCRKSITKKGFLKRHIQKHIDLGENSKAIYGESNSIIGRLVYGPSMSVTVCSPPEIKQENTYDSYCEINDTQNLLYMQVPEEKEVVNPGSTTSVLPLKRAVKERRAAMKETQKSKKDNPEAIHCEICEKNFRNNLSFGLHSIKHNNKYSCHICEYKTVIRNKFERHIKIHEGTNGYKCEMCDKHFAVANHALEHRYFHTGEKPFQCDVCGKHFTYSRFLNAHYRSQHCTIQTGQARKQYTCTLCDKHYISCTGLTRHQQRHHTVGFDQSKLCDICGKRLASRDQLKFHRRIHTGDKPYSCEVCSKSFTRKDLLREHERVHTGERPYTCQYCNKCFTQRSPLKIHERTHTGERPFECLMCKKTFIAKGILGAHMKKCQGIKDSK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-