Vsat142988.1
Basic Information
- Insect
- Vesta saturnalis
- Gene Symbol
- -
- Assembly
- GCA_036346205.1
- Location
- JARFJB010002011.1:659936-660439[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 1.8e-06 0.00019 24.6 0.0 4 40 18 54 17 59 0.93
Sequence Information
- Coding Sequence
- ATGGTGCGGAATTATGTGCGAAAAACTAAACGACGTAATTACACTTGCCGAGAGCTGAATGAAGCTTTAGGGCAATGTAGGCAGGGTGTCATGACTATAAACGCATGCAGTAAAGCTTACAATATCCCAAGAGAAACCTTACGCGACCATTTATCCGGGCGCCGTGGTAAACGCCAAACAGATGGAAATGTCGGTGGAGGTGGTAGACCTACAGTGTTTACAAAAAATCAAGAAACCGAACTTGCGGATTGTTTGAGAGTGATGGCCAAAAATGGGTTCGGTTTGACACGTACCGAGGTATTTGACATTGTtcaaaaattcgtaaaaaatAACTCTATTGCCACCCCATTTAAAAATGGTAGACCGGGTGAAGATTGGTGGCTACAGTTTAAGCGGAGACATCAGTTGTCAATAAAAAAAGCAGAAGGGCTGGAACATTTACGAAAAAAGCAAGGTGCAAATCCTTTTGTCGTGTACGGTTTTTATGATCTATTAGAAAAATAA
- Protein Sequence
- MVRNYVRKTKRRNYTCRELNEALGQCRQGVMTINACSKAYNIPRETLRDHLSGRRGKRQTDGNVGGGGRPTVFTKNQETELADCLRVMAKNGFGLTRTEVFDIVQKFVKNNSIATPFKNGRPGEDWWLQFKRRHQLSIKKAEGLEHLRKKQGANPFVVYGFYDLLEK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01517127;
- 90% Identity
- iTF_01517126;
- 80% Identity
- iTF_01517018;