Vsat025676.1
Basic Information
- Insect
- Vesta saturnalis
- Gene Symbol
- cheC
- Assembly
- GCA_036346205.1
- Location
- JARFJB010000364.1:75207-77508[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 6.8e-07 7.1e-05 26.0 0.0 3 42 18 56 16 58 0.92
Sequence Information
- Coding Sequence
- atgtCAAATACGCCGAAAAGGAGTCAGCGCCAATTTTTTAGTTATGCAAAGGAAGACATGCAGAATGCTATTAGGGCTGTAGGGGAAGGATTGAATAAAAAACAAGCTGCTCGACAATTTAACGTTCCTCGCAGtactttaataagaaaattatctGGCAATGTTCCATTGCATGGGAAAATGGGTCCACCTACAGAACTATCTGATGCTGAAGAGCAAACACTAGTGGAATGGATACTGAATATGACCAAAAAAGATTTTCCAGTGCACAAGAATAACTTGTTGACATCGGTTCAAAGGTTTTTAAAAGACAATAAGAAAGAAACACGTTTTCTAAGTGGCAATTCTACCCCTGGCAGATCTtggttcaaaggtttccttaaacgaCATCCATGCATCAAGGAAAAACATGCAGAATCTTTAAGTAAGGCTCGAGCGGCTGTGTCACTGGACCGTATTTACTTGTGGTTTGATGAAATAAAATCTTACTTTGAAGAAAACAATTTGATGGACGTCTTGCAAGACAGTAGCCGCATATTTAATGCTGATGAAGCAGGGTTTAATCTCTGTCCAAAAAGTGGTAAAGTGTTAGGGCCCACAGAAATTTCCGAAGATTTCTATCAACGCGTCCAAAGTGAAAAAGAGCAACTTACTGTTTTAGCGGCTTTCTCAGTTGATGGGAGAAGAGTTCCTCCTATGATAATTTTCCCATACAAGAAAATGCCCAAAGTAATAGTTAATTCAGTGCCAGAAGATTGGGCACTAGGTAGGTCTGACTCCGGTTGGATAAATTCCGAGGTTTTCTATGAGTATATGGCAAACCACTTCTTTTCATACTTAAAGCAAAACAATATTCAGAAACCAGTCGCATTTTTTGTAGACGGGCATCGTACACATCTTACACAACAAGTGAACCATTTTTGCGATGATAacggaattattttaattacattgccCCCAAACACTACCCACATAATGCAACCAACGGATGTTGCAATATTCAAACCGTTAAAATCAGAATGTGTATCAGCAGTCAGAAAATGGAAAATTGACAATTTTCCAAAGGATGTGACGCACTATACATTTGGTTCTATACTTagtacagtttttaaaaaatatgctactgaaaaaacaataaagaatGGTTTTAGAAAGAGTGGTATTTTTccgtttgataaaaataatgtagACAAATCAAAGTGTATCCCAAACCGAACTCCAATCAATTTTCCAACTGCGGCAAGTCGtaataataacttttcatttaaaaagcAGGTTCTAGTTGCCGTTGAGAAAAAGATCAGTAAAGAAGATCTTCGCAATTTTCGTGAAGTATTTAATGCAGGAATCAATTGGAATGGAAACATAGCATCACTGAATCTTTATAAtgtttggtttaatttaaaacattatgTCGTTGAACTGGAATCTACAAGAATGGATAATAGTAGTGACACTCATGGTAACAAAGATTTAACAAAAACTGTTGAAAATAGCATAGATCAAAGGAATAGCATATCCTATGCTCCGACGGCTGACAATGCTACATCAGGTATTACTCCCCAAGTGAGCCCACAAATTTATGATGatgttaataaagaaaatataagtgATAATGGACAAAGAAATAATGGCTCCATCCCTGGTCCAAGTACTACTAATATTGAACGAAGAAATAACTCGTTCCCTGGTCCAAGCAGAACtgatattgaacaaaaaaataatagttcacCTATTgAGAAAGAAGTTGCACCAACAAGAAAAAGAACATCTTTTCCCATGGTAGTGTCTGAAAAATCTTATAGAGATTTTTATGATAATCAGAAAAAGGACAATAAGCGAAGAAAATCCATACCCAAAAAGATAGAAGAACTAGCATATGACACCTCATCTGATTCTGAAGAGATTACCTATAACGATGATGATGACATGGATATAAGTGATGAAAGTCCACTTCAATTGGAATGTGGATCATACGTAATTGCCAGATACGATGACAATTATTATCCAGGCGTTGTTATGAAATGTGATCCAGAAGGAGCAGACATCAAAGTAATGATTAAAGCCGGTGTAGGCGCTTGGAAGTGGCATCCTAAAGacgacattttatattattttaaaaatgatataatttctacAATTGATAAACCACAAATGTAG
- Protein Sequence
- MSNTPKRSQRQFFSYAKEDMQNAIRAVGEGLNKKQAARQFNVPRSTLIRKLSGNVPLHGKMGPPTELSDAEEQTLVEWILNMTKKDFPVHKNNLLTSVQRFLKDNKKETRFLSGNSTPGRSWFKGFLKRHPCIKEKHAESLSKARAAVSLDRIYLWFDEIKSYFEENNLMDVLQDSSRIFNADEAGFNLCPKSGKVLGPTEISEDFYQRVQSEKEQLTVLAAFSVDGRRVPPMIIFPYKKMPKVIVNSVPEDWALGRSDSGWINSEVFYEYMANHFFSYLKQNNIQKPVAFFVDGHRTHLTQQVNHFCDDNGIILITLPPNTTHIMQPTDVAIFKPLKSECVSAVRKWKIDNFPKDVTHYTFGSILSTVFKKYATEKTIKNGFRKSGIFPFDKNNVDKSKCIPNRTPINFPTAASRNNNFSFKKQVLVAVEKKISKEDLRNFREVFNAGINWNGNIASLNLYNVWFNLKHYVVELESTRMDNSSDTHGNKDLTKTVENSIDQRNSISYAPTADNATSGITPQVSPQIYDDVNKENISDNGQRNNGSIPGPSTTNIERRNNSFPGPSRTDIEQKNNSSPIEKEVAPTRKRTSFPMVVSEKSYRDFYDNQKKDNKRRKSIPKKIEELAYDTSSDSEEITYNDDDDMDISDESPLQLECGSYVIARYDDNYYPGVVMKCDPEGADIKVMIKAGVGAWKWHPKDDILYYFKNDIISTIDKPQM
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01517042;
- 90% Identity
- -
- 80% Identity
- -