Vsat159866.1
Basic Information
- Insect
- Vesta saturnalis
- Gene Symbol
- -
- Assembly
- GCA_036346205.1
- Location
- JARFJB010002120.1:4242817-4243763[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 2.2e-05 0.0023 21.1 0.0 4 40 18 53 15 57 0.88 2 2 4.4 4.6e+02 4.2 0.0 27 44 233 250 233 251 0.89
Sequence Information
- Coding Sequence
- ATGGTTAGAACTTATGTTCGGAAGACGACAAGACAACAATGGGATTCAAATTCTATGCGACTTGCCTTAGAAAATATTTCTAATGGCATGCCTTTTAAACGAGCTGCTAGGGTTTGTAATCTGCCTTTGAGTACTTTAAAGAGAAGGgccaaaaatcaaaatcaattgGTAACAGGTTATTCAAAACGTCTCGGTAGATTCACTACAATATTGCCCGAAGAATTGGAGACTTACTTAAAGAACATTTGTCAAATGGCTTACGAGCTTGCAGAAAGGAACGGTATTGGGCATAggttctctaaaaataaaaagacagCTGGTACGGCTTGGTTTAGAGATTTTCTAAAGAAACATCCAGAGATTTCTTTTAAAACTCCTGAGGCAACTTCAGCCGCCAGAGCGAGAGGATTTAATAAAGAAGCAGTCGCTAAGTATTTTTCTCTTTTAGATGaaatacaaagtaaaaataacatgAATCCTATGAGAATATACAATGTGGATGAGTCAGGTATCCAGACTGTCCCTAGCAAACTGCCCAAAATTTTAGCACACAAAGGGCGAAAACAGGTCGGCTTTCTAACAAGCGCTGAGAGGGGGCAAAACGTCAGCGTTGTTCTCTGCGTAAATGCTGCTGGTCAATTCATTCCTCCAGCAATAATATTTCCTCGTAAGAGAAGGAATGAATTATTATTTCAAGGCGTCCCGTATGGAACACTTCTTCTTTACAATGAATCTGGATACATGAAATCTGATACCTTCATTCTGTTCTTAAAGCATTTTCAACAACATACCTAG
- Protein Sequence
- MVRTYVRKTTRQQWDSNSMRLALENISNGMPFKRAARVCNLPLSTLKRRAKNQNQLVTGYSKRLGRFTTILPEELETYLKNICQMAYELAERNGIGHRFSKNKKTAGTAWFRDFLKKHPEISFKTPEATSAARARGFNKEAVAKYFSLLDEIQSKNNMNPMRIYNVDESGIQTVPSKLPKILAHKGRKQVGFLTSAERGQNVSVVLCVNAAGQFIPPAIIFPRKRRNELLFQGVPYGTLLLYNESGYMKSDTFILFLKHFQQHT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -