Vsat040113.1
Basic Information
- Insect
- Vesta saturnalis
- Gene Symbol
- -
- Assembly
- GCA_036346205.1
- Location
- JARFJB010000586.1:4097994-4098644[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 5.8e-07 6e-05 26.2 0.0 13 41 26 55 15 58 0.81
Sequence Information
- Coding Sequence
- aTGCCAAGAAATCGTCAAAGGACCACCGCTAAAGCGGCTTGGACCGAAGAAGACCTTCAATCTGCTAAAACTACGATTGAAGGAGGTTTGTCCATAAGAAAAGCCGCAAAACAATGTAACATACCATTTACTACTTTGAGAGATCGACTAAAAAATGAAAAGATAAGCAACCCAACACTAGATCGCAAGCCCGTTTTCACCCAACAGCAAGAAACTGAAATTGCTGAACAAGTTAAGTTGCTGGGTTCGCTATACTATGGACTCAATGTCGCAGATTTGcgtaaacttgtttataaatatgcTGAGCTCAACGATATCAAAAACAATTTTGACCAAAGCAGCAACACAGCTGGATTGGATTGGGTACACGCCTTTATGAGACGGAATCCTTCAGTTTCTATACGCAAAGCTGAAGCGACAAACATAAATAGAGTTTCTGCTTTCAACAAAGAAGAAATAACACATTTCTATGATAAACTTGGCGACTTaatgaaaaaacataagtttattcCCAACAACATTTACAATGCGGACGAAACTGGTATCACCACGGTTACAGACCCAGGAGAAGTGCTCGCCGAAAAAGGACAAAGAAGAGTCGGATCTGTTACAAGCGGCGAACGAGAAAGCAAAGTAACAGTTATGCGGTGA
- Protein Sequence
- MPRNRQRTTAKAAWTEEDLQSAKTTIEGGLSIRKAAKQCNIPFTTLRDRLKNEKISNPTLDRKPVFTQQQETEIAEQVKLLGSLYYGLNVADLRKLVYKYAELNDIKNNFDQSSNTAGLDWVHAFMRRNPSVSIRKAEATNINRVSAFNKEEITHFYDKLGDLMKKHKFIPNNIYNADETGITTVTDPGEVLAEKGQRRVGSVTSGERESKVTVMR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -