Vsat012608.3
Basic Information
- Insect
- Vesta saturnalis
- Gene Symbol
- -
- Assembly
- GCA_036346205.1
- Location
- JARFJB010000165.1:885578-887233[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 2.2e-07 2.3e-05 27.6 0.0 3 39 20 56 18 61 0.88
Sequence Information
- Coding Sequence
- ATGCCTAGAACATACAAGAGAAAAGCTGGCTCCCGAAGCTATCAAAATTATTCGCAGGAGACCCTACAACTCTGCTTAGCAGCAGTCCGAAGTGGACGGATGTCTCAAAGGAAAGCCGAACAGGAGTTTAAAATTCCCCGTAGAACAatcatcaataaattaaaaggtaaccggAAGACTAGGCCTGGTCGGCCTTCAGTATTTTCTGAAGGAGAAGAAGCTGCATTTGTAAACTGTATATTAGGCTTCAGCGAATTTGGATTCCCACTAGACTCTGTGGATTTAAGAATGATTGTTAAATCTTACCTTACGCGAATCGGTAGAAATgtgttgcaatttaaaaacaatgttcCCGGCCACGAATGGGTGTTGGGTTTCTTGAAACGTCACCAAGAACTCACCGTACGATTTGCTAGCAACATAAAGCGTAGTAGAGCTAGAATTAATGTCACAACATTGACAGAATATATTTCCAATTTGAGCGAAGTTGTAAAAGATGTGCCGCCAGAGAACATTTGGAATTGCGACGAGTCTAATCTCACCGATAACCCTAGCCAGAAAAAAGTGATAACTAAGCGCGGGTGCAAATATCCAGAAAAGGTTCGAAATTCTTCGAAAAGTAGCATTTCACTCATGTTTGCTGGCAGCGCTGCTGGAGAGGTCTTGCCACCCTTCGTGGTCTATCGATCTTCTTGCATGTGCAGCACATGGACAGAAAATGGCCCCAAAGGAGCCCGATATACTAATACTAGAAGTGGTTGGTTTGATGCTTGCAGCTTTACAGAGTGGTTCGAAACCCTAATGCTGCCGAAGTTCAGAAAGCTACAAGGAAAAAAGGTTTTAATCTGCGACAACTTATCATCACACATATCAGTCCATGTGTTAAATCTGTGTAAAGCTAATAATGTTTCATTTGTGTGCTTACCACCTAATAGCACTCACCTCACACAGCCTCTAGATGTGGCTTTCTTCCATCCAATGAAACTGGCATGGCGCAAAATATTATCTGAGTGGAAGGAAACATCGGAAGGTTCCAAAAGTACCGTGCTTCAAAAACAACATTTTCCACTGCTTTTGAAAAAACTCATGACTGCCTTAGAACCAAATGCTGCTGCGAATTTAATATCGGGCTTTAGAAAATGCGGCATTTACCCAGTAAATATTGACGAACTCCTAAAAATGATCCCTCATCATAATAGTGATATCACTGCAGTAGAATCTTCATTCCTGGAAACTTTGGCAACTAAAAGATCAGAATTAACTGAGGTAAAAAGGACAAGAAAGAAAATGAGGATAGCTGCAGGTAAAAGCATTGGACCTAAGGACCTAGATGATAAAGAAACCCAGTCTAATGAACCACAGCGAAAGAATTTAAAGTCTAGTAGGAAAGTAAGAAATGCAGTAGATGACTCGCTTGGTGATGAAATATCATTCCAGGATTCATCTGATGATGATGCTGAAACCTATTTTGCAAATATGGTAAGAGAATCCATAGAGGATGAAGAAACAGTCGCCATAGCTTCTGGAGAAAAATCTTGCAAAGATCTTCTACAACTGCCTGAGATCGTTCGAGAAGCAGGAAATATGTTATTTTCACATATGAAGGAGAGCTGTTTCCTGGTCAGATACTATCGTATGATAATGATGGGGCTGTAA
- Protein Sequence
- MPRTYKRKAGSRSYQNYSQETLQLCLAAVRSGRMSQRKAEQEFKIPRRTIINKLKGNRKTRPGRPSVFSEGEEAAFVNCILGFSEFGFPLDSVDLRMIVKSYLTRIGRNVLQFKNNVPGHEWVLGFLKRHQELTVRFASNIKRSRARINVTTLTEYISNLSEVVKDVPPENIWNCDESNLTDNPSQKKVITKRGCKYPEKVRNSSKSSISLMFAGSAAGEVLPPFVVYRSSCMCSTWTENGPKGARYTNTRSGWFDACSFTEWFETLMLPKFRKLQGKKVLICDNLSSHISVHVLNLCKANNVSFVCLPPNSTHLTQPLDVAFFHPMKLAWRKILSEWKETSEGSKSTVLQKQHFPLLLKKLMTALEPNAAANLISGFRKCGIYPVNIDELLKMIPHHNSDITAVESSFLETLATKRSELTEVKRTRKKMRIAAGKSIGPKDLDDKETQSNEPQRKNLKSSRKVRNAVDDSLGDEISFQDSSDDDAETYFANMVRESIEDEETVAIASGEKSCKDLLQLPEIVREAGNMLFSHMKESCFLVRYYRMIMMGL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01516617; iTF_01516685; iTF_00980880;
- 90% Identity
- iTF_01516617;
- 80% Identity
- -