Vsat196284.1
Basic Information
- Insect
- Vesta saturnalis
- Gene Symbol
- -
- Assembly
- GCA_036346205.1
- Location
- JARFJB010002410.1:755971-757781[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 2.6e-07 2.7e-05 27.3 0.0 8 36 24 52 22 62 0.87
Sequence Information
- Coding Sequence
- ATGCCATCTCGAGCAGAACGAAAAGCCAAAGGCCTACGGTGTAAATGGGACGCAAAAAACACGAAAACTGCAATGGAAGCGGTGAAAACCCAACAAATGGGTGTAAATGAAGCGGCCAGGTCGTACAACATTCCAAAAACGACTCTTAAGAGGAAATTAAAATGTTACCAGGAAATTCCGTCCATCGAAAAACTTAAGCCGCCACTAGGAAGACGTGCAGATCTACCACAGGAATTGGAGGACGACCTAGTACAACACTGTCTTCTTTTGGAGCGTCTGTTTTACGGACTCACTCGAGAAGGGCTTAAAAAGTTGGCGTACGAAattgcagaaaaaaataaaataaatacaagattTAACTTAGAAAAACGATTTGCCGGTACGGAGTGGTACAGGGGATTTATGAATCGTCATCCCGAGTTAAGTTTAAGATTACCGGAAGCTACTTCTCTGGCTAGAGCAGCAGGGTTTAATAGAGTTGTAGTAAATTCCTTCTTCAACTCTTACGAAAAGATTGTGGCAGACAATGTTCTCACACCAGATCGAATATTCAATATGGATGAAACATATCACACTGTCGTACAAAAACCTAAAAAGGTGATCGCTCAAAAGGGAAAGCATCAAGTGGGTGCTATCACTTCCTGTGAAAGAGGTCAGAACGTAACAGGAACTTATTGTATGAGTGCTACTGGTTTCTATATTCCACCGTTTTTAATTTACGCTAGAAAACGCATGAAAGATAGTGTGACTTATGGGGCACCACCAGGAACCACTTTTCATTGTCAGGATAAAGGTTGGATGGATAGTGAAGGCTTCTAtcaatttcttcaacattttATCCAGCATGTGAAGCCATCCAAAGACCTGAAAGTTTTGATTGTGCTCGATGGCCATAGTAGCCATACCCAGACCATGAAAGCTATTGAATTCGCAAGAAAGAATGGAATAATAATGCTTTCATTCCCTTCTCATTGCACGCACAGAATGCAACCATTGGACGTTACATTTTTTAAACCCCTTAATACATATTTTTCTTCggcaataatttcaaaattgcacGAATTTCCCGGAAAACCACTGAAAATCGACGACATTAGTTCCTTATTGGGTAAAGCATTTTCTAGAGCGGCTACAATGGAAGTAGCTATAAATGGTTTCAGAAAAACAGGCCTGTGGCCTCCAGATAGACATGTGTTTAATGATGCTGATTTTGCAGCGCCAGAAGTGACAGATAGACCACTCCAGGAGAATTTACCTGAACCTCAAGAAACTACTGTATCTTCAGGTACTAGTACTACCAGTCTTCAAGCGGAGAAGATAACCACTGCAAACATCTCAACGGTAATTGCTGAAAAAGCAGTAATGACTTCTTCGCCAATACCATTATGTTCCTCggaaaagaaaaaattgaattcATCTTCACCTTACAAGACGCAATTAGAAATTCAACAGTCACCAAAACAAAATACTAACGTCAAAATAAATCAGGCTGCATCAAACTTGTTTagtaaaaaaaacagaaaaggtCCTCAGAAGGCTACATTCAGAACAACGACGGATAAGAAACAAGAgaacaaaaataatgtagaagAAGAAGAACCAACTCGTTGCCTTGTTTGCGACGAGTCGCACGATGAGGATTGGATTATGTGCCAAACTTGCAAGAATTGGGCGCATGAAGCTTGTGCAGATATCAGGGACATAAATTATGATTACTGTGACAATTGTGCACCATAG
- Protein Sequence
- MPSRAERKAKGLRCKWDAKNTKTAMEAVKTQQMGVNEAARSYNIPKTTLKRKLKCYQEIPSIEKLKPPLGRRADLPQELEDDLVQHCLLLERLFYGLTREGLKKLAYEIAEKNKINTRFNLEKRFAGTEWYRGFMNRHPELSLRLPEATSLARAAGFNRVVVNSFFNSYEKIVADNVLTPDRIFNMDETYHTVVQKPKKVIAQKGKHQVGAITSCERGQNVTGTYCMSATGFYIPPFLIYARKRMKDSVTYGAPPGTTFHCQDKGWMDSEGFYQFLQHFIQHVKPSKDLKVLIVLDGHSSHTQTMKAIEFARKNGIIMLSFPSHCTHRMQPLDVTFFKPLNTYFSSAIISKLHEFPGKPLKIDDISSLLGKAFSRAATMEVAINGFRKTGLWPPDRHVFNDADFAAPEVTDRPLQENLPEPQETTVSSGTSTTSLQAEKITTANISTVIAEKAVMTSSPIPLCSSEKKKLNSSSPYKTQLEIQQSPKQNTNVKINQAASNLFSKKNRKGPQKATFRTTTDKKQENKNNVEEEEPTRCLVCDESHDEDWIMCQTCKNWAHEACADIRDINYDYCDNCAP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01516524; iTF_01516351; iTF_01516555; iTF_01516367; iTF_01516382;
- 90% Identity
- -
- 80% Identity
- -