Basic Information

Gene Symbol
-
Assembly
GCA_036346205.1
Location
JARFJB010001053.1:769331-769789[-]

Transcription Factor Domain

TF Family
HTH
Domain
HTH_psq domain
PFAM
PF05225
TF Group
Helix-turn-helix
Description
This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 1 8e-08 8.2e-06 29.0 0.0 9 41 22 53 15 57 0.82

Sequence Information

Coding Sequence
atgccTAGAAGTAAAAGTGGGGTAAAGAGACAGGGGCCTGCTAAAGAGCAAGTTTCAAGTGCTTTTGCTGCCGTTAAAGGTGGAATGAGCCAACGGAACGCCTGTAAGGAGTTCAATGTTTCCAGGGCAACTCTTCAGCGACTTTTAAAACGTGATGAGAACGTAGTTAATAATTATAAGCCGTATGAAAACTGTGctgtaaaaaaagtgttttctaCCGCAGAAGAGACAGTTCTGGTAAAATATCTTATTACATCATCAAAAATGCACTACGGTCTCCACAGAAATCAGCTCAGAACTTTGGCTTATTCGTTTGCAAAAGCAAATAACAAGAATATACCACAATCTTGGATAACCAATGAAAAAGCTGGAAAACAGTGGTTTCGAGAATTCATGAGTAGACATAGTAAACTACTAAGTCTTAGAAAACCGGAGTCTGTCAAGGGCCACGAGCTTTAA
Protein Sequence
MPRSKSGVKRQGPAKEQVSSAFAAVKGGMSQRNACKEFNVSRATLQRLLKRDENVVNNYKPYENCAVKKVFSTAEETVLVKYLITSSKMHYGLHRNQLRTLAYSFAKANNKNIPQSWITNEKAGKQWFREFMSRHSKLLSLRKPESVKGHEL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01516872;
90% Identity
iTF_01516872;
80% Identity
-