Basic Information

Gene Symbol
-
Assembly
GCA_036346205.1
Location
JARFJB010002310.1:385574-387148[-]

Transcription Factor Domain

TF Family
HTH
Domain
HTH_psq domain
PFAM
PF05225
TF Group
Helix-turn-helix
Description
This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 2 0.0039 0.41 13.9 0.0 18 34 2 18 1 28 0.84
2 2 0.0026 0.26 14.5 0.0 14 37 79 102 78 109 0.85

Sequence Information

Coding Sequence
ATGGCAGTGCTAAAGGCCTCGCAACAATATGGCATTCCTAGAAGAACTCTAATAAACCAATTGCTGACCGGTAGCACGGTAAGGAAACTAGGTCGAGGTTCTTTATTGAACAAAGAACAAGAAACTGAGTTATGTAGCCGTATTTTTCGTCTCGCGGATGTTCCTATGCCCATAACAAGCAAGGTTCTTCGAAGAAGTGTATACAATTTCGTGGAAGATAGGAAAGAGCCCTGGAGCGATGGAATGGCAGTGCTAAAGGCCTCGCAACAGTATGCCATTCCTAGAAGAACTCTAAGAAACCACTTGCTGACCGGTAGCACGGTAAGGAAACTAGGTCGAGGTCCTTTATTGAACAAAGAACAAGAAACTGAGTTATGTAACCGTATTGTTCGCCTCGCGGATGTTCCTATGCCCATAACAAGCAAGGTTCTTCGAAGAAGTGTATACAGTTTCGTGGAAGACAGGAACATTCCCCATAAATTTAGCCAGATATCTAGAATGACCGGTAGAAAGTGGATGTACCTTTTTTGTATACGTAATCCCAATGTAGCTCAGCGAAAAGTCCAATTTCTAAACATTGCCAGAGCGCAAAAACTTGATAGGAATCCAGAAAGAAAAATCACACAATTGAGATTTGGTGAAATTCTGAGCAAAGTGTGGCCAAAAGTAATGACTCCCAGTAATTTGATGGTAGGATTTAGAGCAACCGGAATTTTTccgtttgataaaaatattctacCAGATATTGCCTTTGCTCTTAGTGCTCTGACTGAAATTGAGATAGAAGAGCATCAACCTGCAAGAAGCACGAAAGATTAA
Protein Sequence
MAVLKASQQYGIPRRTLINQLLTGSTVRKLGRGSLLNKEQETELCSRIFRLADVPMPITSKVLRRSVYNFVEDRKEPWSDGMAVLKASQQYAIPRRTLRNHLLTGSTVRKLGRGPLLNKEQETELCNRIVRLADVPMPITSKVLRRSVYSFVEDRNIPHKFSQISRMTGRKWMYLFCIRNPNVAQRKVQFLNIARAQKLDRNPERKITQLRFGEILSKVWPKVMTPSNLMVGFRATGIFPFDKNILPDIAFALSALTEIEIEEHQPARSTKD

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-