Vsat117764.1
Basic Information
- Insect
- Vesta saturnalis
- Gene Symbol
- -
- Assembly
- GCA_036346205.1
- Location
- JARFJB010001851.1:4190588-4191115[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 1e-08 1.1e-06 31.8 0.0 2 41 19 59 18 61 0.84
Sequence Information
- Coding Sequence
- ATGCCCAGAAATAGAATAAAACCTCTGGGGACAAGAAACTATGCAAACTACAGTCCACAAATATTAGAGGAGTGCCTCGAGGCCATTAGGTCAGGTGAACTGACGCAACGATCAGCTGAAACAAGGTATGGCATCCCTAAATCAACCATTAAGAACAAACTGAAAGGCAGACACACTAGTAAAGTTGGACGTGCCAAAACCTTCAGTGAAGATGAGGAGTTAGCTTTCAAGCAACATCTGATAAAAATGTCTAATTACGGATTTCCAGTTGTTGAGACTGATTTTAGATACGCAGTGAAAGCTTATTTAGATAAGAAAGGTGTCAAAATTGATGCATTTTGCCAAAATTTTCCTGGATATGAGCGGATAAAGTCTTTTTTAAAAAGGCATTCGCAATTCACAACTCGCTTAAGctcaaacataaaaaaagttaGAGCTCAGGTAAACGCTAAAGATGTTGAAAGTTACATGGAAAACTTACATGTGGACCACTTGGACGGAAAACGGGCCAGAAGGAGCTCGTTATAA
- Protein Sequence
- MPRNRIKPLGTRNYANYSPQILEECLEAIRSGELTQRSAETRYGIPKSTIKNKLKGRHTSKVGRAKTFSEDEELAFKQHLIKMSNYGFPVVETDFRYAVKAYLDKKGVKIDAFCQNFPGYERIKSFLKRHSQFTTRLSSNIKKVRAQVNAKDVESYMENLHVDHLDGKRARRSSL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01516227; iTF_01516615; iTF_01516130; iTF_01516326; iTF_01516601; iTF_01516222; iTF_01516776; iTF_01515911; iTF_01515915; iTF_01515833; iTF_01516137; iTF_01516238;
- 90% Identity
- iTF_01516601;
- 80% Identity
- -