Vsat055859.1
Basic Information
- Insect
- Vesta saturnalis
- Gene Symbol
- -
- Assembly
- GCA_036346205.1
- Location
- JARFJB010000834.1:2813421-2825952[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 0.0031 0.32 14.3 0.0 5 40 1 36 1 40 0.94 2 2 2.7e-05 0.0028 20.9 0.0 1 40 609 648 609 652 0.94
Sequence Information
- Coding Sequence
- ATGCAGCGTGCTATTGATAGTGTCAATAGTGGTGAAGCAGGTTGGCTTAAAGTATCCAAACTCAATGGGGTTCCACAAACTACACTTCGGAGAagagttcaaaataaaaacataactgTTCGGGGTAACAAAAAGGGATTAGGTCGGTATCAGACCACTTTCGATGCAAATTTAGAAAGAGAAATTGTGGTCCACATTAAACTTCTAGAATCACGCCTATTTGGACTGACCCCGACTGACGTGCGCAAATTAGCTTATGATCTGGCCGAAAGAAAAGGCCTGCAGCACCGCTTTAACAAAACTAATAAGATAGCTGGTTGGGATTGGTTAGCAGGTTTTCGGAAAAGAAATGTAGACATTTCTTTAAGAAAACCTGAGCCCACTTCAAAAGCACGTGCCATGGCATTTAATAAACCTCAAGTGGCAAAATTTTTCGCAACATATCAaacaattttggaaaaatataacgTTCAACCGACCAGAATTTATAATGTTGATGAAAGCGCTCTATCTACGGTACAAAAACCTCCCAAAGTATTTGCTCAAACTGGAAAAAAACAAGTTGGTGCACTTACTAGTGCTGAGCGGGGAATTCATGTCACTATGGTATGCTGCATGAGTACCACAGGCCACTTTGTTCCTCCTGCTTTAATTTTTCCACGGAAAAGATGGAAGGCTGAATTATTAGATGGAGCACCTTTAGGAACATTAGGAATGAATCAAGAAAATGGATGGATGAATAGTGAACTGTTTGTGAAATGGTTACAAcactttaaaaaatttaccaaccCCACATTGTCCGATAAAGTGCTGTTGATTGTCGACGGGCACTCCAGCCATAAGGGTATCGTAGTTTTAACGTTTGCTAAAGAAAACGGTATTATAATATTAAGCCTCCCCCCACACTGCACCCATAGGATGCAGCCTCTGGATGTAGCTTTTTATGGACCAATGAAAACCTATTATGACCTATATGGCTTAAGACACATCCTGATAGGGTCTGCGCAAACTGCAATTGCCGAAAACGGTTTCTTGAAAACTGGAATCTGGCCAGTAAATCCCAATATTTTCCCCGACTATCTATTCGCACCATCAGAAACTACCAATATCAGACAAGCAGAGATTTATAATGATGAAAATGCAAATAGCGAACAAAGTGACGCCAATGTCAATGATGAAGATGTGATACATCGCAACGTCGAGGTTGGACGTGCTGAAATTTCTGAACAACGAACACCTGAAAAACAAAGCACTGCTTCATCTTCATGTTGTAACCTAAACAATAGCAAAAAACACTATTTATTTTCTGTTGACCAGATTTCTCCAGTTCCGCAAGCAGTTTTTAGCACTACAAGAAAACGTAAGACCAATGCAGCTGAAGAGCTTACAGGGACACCAAATATGGAAGAAGTCAAAGCAAGGCAGTTGACAAAAATTGAGAAGGAAAAGGTGGTCGAATTACGGCGCAAAGCTAGAGAAGCCAAGAAGACAGTCCAGCCAGAAACCCCTGAAGAAGGTgacacagaaaaaaataaaatacatcaccATACAGCAAGACAATGCACGAAGAGAATTGTTAATCGGGTATCTGATGACGATTCTGGTTCTGAAGAAGATCCATTTTGCAAGATGACGATAGTGACGAAGATGCGGCTTGCCTCTATTGCAATTCACTATTTTCAAAATCCAAAAGTCAAGAAAAGTGGATTAAATGCGTTAAGTGCAGAAATTGGGCCCATTGCAAGTGCGCTGATGTCTCGCCAAAGTGCAAAGTATATATTTATGGTTGGaaactataaaagaaaaagtaatcGGCAGAGCTGGAGTGAGGATGCAATGCAGCGTGCTATTGATAGTGTCAATAGTGGTGAAGCAGGTTGGCTTAAAGTATCCAAACTCAATGGGGTTCCACAAACTACACTTCGGAGAagagttcaaaataaaaacataactgTTCGGGGTAACAAAAAGGGATTAGGTCGGTATCAGACCACTTTCGATGCAAATTTAGAAAGAGAAATTGTGGTCCACATTAAACTTCTAGAATCACGCCTATTTGGACTGACCCCGACTGACGTGCGCAAATTAGCTTATGATCTGGCCGAAAGAAAAGGCCTGCAGCACCGCTTTAACAAAACTAATAAGATAGCTGGTTGGGATTGGTTAGCAGGTTTTCGGAAAAGAAATGTAGACATTTCTTTAAGAAAACCTGAGCCCACTTCAAAAGCACGTGCCATGGCATTTAATAAACCTCAAGTGGCAAAATTTTTCGCAACATATCAaacaattttggaaaaatataacgTTCAACCGACCAGAATTTATAATGTTGATGAAAGCGCTCTATCTACGGTACAAAAACCTCCCAAAGTATTTGCTCAAACTGGAAAAAAACAAGTTGGTGCACTTACTAGTGCTGAGCGAATTCATGTCACTATGGTATGCTGCATGAGTACCACAGGCCACTTTGTTCCTCCTGCTTTAATTTTTCCACGGAAAAGATGGAAGGCTGAATTATTAGATGGAGCACCTTTAGGAACATTAGGAATGAATCAAGAAAATGGATGGATGAATAGTGAACTGTTTGTGAAATGGTTACAAcactttaaaaaatttaccaaccCCACATTGTCCGATAAAGTGCTGTTGATTGTCGACGGGCACTCAGCCATAAGGGTCTGCGCAAACTGCAATTGCCGAAAACGGTTTCTTGAAAACTGGAATCTGGCCAGTAAATCCCAATATTTTCCCCACTATCTATTCGCACCATCAGAAACTACCAATATCAGACAAGCAGAGATTTATAATGATGAAAATGCAAATAGCGAACAAAGTGACGCCAATGTCAATGATGAAGATGTGATACATCGCAACGTCGAGGTTGGACGTGCTGAAATTTCTGAACAACGAACACCTGAAAAACAAAGCACTGCTTCATCTTCATGTTATTTCTCCAGTTCCGCAAGCAGTTTTAGCACTACAAGAAAACGTAAGACCAATGCAGCTGAAGAGCTTAGGGACACCAAATATGGAAGAAGTCAAAGCAAGGCAGTTGACAAAATTGAGAAGGAAAAGGTGGTCGAATTACGGCGCAAAGCTAGAGAAGCCAAGAAGACAGTCCAGCCAGAAACCCCTGAAGAAGGTgacacagaaaaaaataaaatacatcaccATACAGCAAGACAATGCACGAAGAGAATTGTTAATCGGGTATCTGATGACGATTCTGGTTCTGAAGAAGATCCATTTTTGCAAGATGACGATAGTGACGAAGATGCGGCTTGCCTCTATTGCAATTCACTATTTTCAAAATCCAAAAGTCAAGAAAAGTGGATTAAATGCGTTAAGTGCAGAAATTGGGCCCATTGCAAGTGCGCTGATGTCTCGCCAAAGTGCAAAATATTGCATACCGAAAAAATAATTTTCGGGTGGTGGGATCGAGAAAAAGTGCTAGATGTAACGGAAGCATCATTAATAATCACAGTGAATGATGGCAATTCGGATGATCGTGAAGTTGAAGACGCCGAAGATGATGAATAA
- Protein Sequence
- MQRAIDSVNSGEAGWLKVSKLNGVPQTTLRRRVQNKNITVRGNKKGLGRYQTTFDANLEREIVVHIKLLESRLFGLTPTDVRKLAYDLAERKGLQHRFNKTNKIAGWDWLAGFRKRNVDISLRKPEPTSKARAMAFNKPQVAKFFATYQTILEKYNVQPTRIYNVDESALSTVQKPPKVFAQTGKKQVGALTSAERGIHVTMVCCMSTTGHFVPPALIFPRKRWKAELLDGAPLGTLGMNQENGWMNSELFVKWLQHFKKFTNPTLSDKVLLIVDGHSSHKGIVVLTFAKENGIIILSLPPHCTHRMQPLDVAFYGPMKTYYDLYGLRHILIGSAQTAIAENGFLKTGIWPVNPNIFPDYLFAPSETTNIRQAEIYNDENANSEQSDANVNDEDVIHRNVEVGRAEISEQRTPEKQSTASSSCCNLNNSKKHYLFSVDQISPVPQAVFSTTRKRKTNAAEELTGTPNMEEVKARQLTKIEKEKVVELRRKAREAKKTVQPETPEEGDTEKNKIHHHTARQCTKRIVNRVSDDDSGSEEDPFCKMTIVTKMRLASIAIHYFQNPKVKKSGLNALSAEIGPIASALMSRQSAKYIFMVGNYKRKSNRQSWSEDAMQRAIDSVNSGEAGWLKVSKLNGVPQTTLRRRVQNKNITVRGNKKGLGRYQTTFDANLEREIVVHIKLLESRLFGLTPTDVRKLAYDLAERKGLQHRFNKTNKIAGWDWLAGFRKRNVDISLRKPEPTSKARAMAFNKPQVAKFFATYQTILEKYNVQPTRIYNVDESALSTVQKPPKVFAQTGKKQVGALTSAERIHVTMVCCMSTTGHFVPPALIFPRKRWKAELLDGAPLGTLGMNQENGWMNSELFVKWLQHFKKFTNPTLSDKVLLIVDGHSAIRVCANCNCRKRFLENWNLASKSQYFPHYLFAPSETTNIRQAEIYNDENANSEQSDANVNDEDVIHRNVEVGRAEISEQRTPEKQSTASSSCYFSSSASSFSTTRKRKTNAAEELRDTKYGRSQSKAVDKIEKEKVVELRRKAREAKKTVQPETPEEGDTEKNKIHHHTARQCTKRIVNRVSDDDSGSEEDPFLQDDDSDEDAACLYCNSLFSKSKSQEKWIKCVKCRNWAHCKCADVSPKCKILHTEKIIFGWWDREKVLDVTEASLIITVNDGNSDDREVEDAEDDE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -