Vsat109082.1
Basic Information
- Insect
- Vesta saturnalis
- Gene Symbol
- -
- Assembly
- GCA_036346205.1
- Location
- JARFJB010001736.1:2077211-2081193[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 6.5e-07 6.8e-05 26.0 0.0 5 36 19 50 17 55 0.94 2 2 1.5e-05 0.0015 21.7 0.0 9 39 457 487 451 490 0.84
Sequence Information
- Coding Sequence
- ATGGTTTACTCCTATAAACGAAAGACGACTAGGGGTAGTTGGAATGTGGCGGTCATGGAACGAGCTTTAGAAGCTGTTCGTAATGTAGAAATGGGTTGGTTGAAAGCAAGTAAACATTTCAACGTACCAACTGCCACCCTCCGCCGCCGAGgtcttaacaaaaacaaaattgcaacaaATGCCACAAAACATTTGGGCTCCTTACAATCAGTACTCAATGGAGAGGTGGAAGCTGCAATAGTTAACCTTATTCTGGACATGGAATCCTGTTTTTTTGGATTGACAACAACAGACGTAAGAAAGCTTACATACGAGGTTGCtgaaaaaaagaagataaaacattcttttaataaagaGAATAAGATGGCTGGGAAAGGGTGGTTACGTGGTTTTCGGCAACGTAACCCTGAATTGTCATTGCGTCTCCCTGAAGCCACCTCTCTTGCTAGAGTTGAGGCTTTCAATAAACCCCAGATGGAAAAGTTTTTTACTAAACTTGAACAAGTTATCGAAGAACATAAAATTCATAACACAATGGTCTTCAATATGGACGAATCTGCGCGAACAACTGTTCACGTCCCTTCAAAGGTGTTCGCCAGAAAAGGCAAAAGGCAAGGAGGCGCTCTCACAAGTGCAGAGAGCGGTGTCCATACAACCGTTGTGGCCTGCTTTAGTTCTGGAGGGACATACGTAACACCGGAAATAATATTTCCCAGGCAAAGATTTAATCCTGTCTTGTATGACGGGGCACCAGTAGAGACgttaaaactacataatgaatCTGGCTACATGACGGAGGATTTGTTCAAAATATGGATGCGACATTTTGTTGAGCATGTCAGACCAAATTTCGAGAATaaagctttattaatttttgacggTCATTCAAGTCATAAAAGCTACGAAGCTTTGGAATTTGCtaaaaagaattttgtgataCTGCTTTGCTTGCCTGCACACTGTACACATCGCCTCCAACCTTTGGATGTAGCATTTTTTGGCCCCCTCTATAAATATTACAACCAAGCGGTCACACAATGGTTGAGAGAGAATCCCGATCGCACTGTTGGCATTTATCAAATATCCAAACTTTTTAAACAAGCATATGAAAAAACAGCAACACTAGAGAACGCATCTAGTGGTTTTCGTTCAACGGGGATATCACCTTTTAATTCCAATATTTTTCCAGAACATATGTTTTTGCCTAGTCTAACTACCGATTTGCCTGAAGATGCGCCTGCTACTGAAAGAGAACTACCAAATGTTGATGTGCAAGAGTCAGCAAACAATGACCAAGAAATAATAGTTAGAACTTATGTTCGGAAGACGACAAGACAACAATGGGATTCAAATTCTATGAGACTTACCTTAGAAATTATTTCTAATGGCATGCCTTTTAAACGAGCTGCTAGGGTTTATAATCTGCCTTTAAGTACTTTAAAAAGAAGGGCCAAAAATCGGCAACAGGTTATTCAAAACGTCTCGGTAGATTCACTACAACATTGTCCAAAGAATTGGAGACTTACTTAA
- Protein Sequence
- MVYSYKRKTTRGSWNVAVMERALEAVRNVEMGWLKASKHFNVPTATLRRRGLNKNKIATNATKHLGSLQSVLNGEVEAAIVNLILDMESCFFGLTTTDVRKLTYEVAEKKKIKHSFNKENKMAGKGWLRGFRQRNPELSLRLPEATSLARVEAFNKPQMEKFFTKLEQVIEEHKIHNTMVFNMDESARTTVHVPSKVFARKGKRQGGALTSAESGVHTTVVACFSSGGTYVTPEIIFPRQRFNPVLYDGAPVETLKLHNESGYMTEDLFKIWMRHFVEHVRPNFENKALLIFDGHSSHKSYEALEFAKKNFVILLCLPAHCTHRLQPLDVAFFGPLYKYYNQAVTQWLRENPDRTVGIYQISKLFKQAYEKTATLENASSGFRSTGISPFNSNIFPEHMFLPSLTTDLPEDAPATERELPNVDVQESANNDQEIIVRTYVRKTTRQQWDSNSMRLTLEIISNGMPFKRAARVYNLPLSTLKRRAKNRQQVIQNVSVDSLQHCPKNWRLT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01516233;
- 90% Identity
- -
- 80% Identity
- -