Basic Information

Transcription Factor Domain

TF Family: HTH
Domain: HTH_psq domain
PFAM: PF05225
TF Group: Helix-turn-helix
Description: This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 3 0.29 30 8.0 0.2 25 42 28 46 27 47 0.80

2 3 1.2e-05 0.0013 22.0 0.3 10 42 133 166 132 167 0.88

3 3 1.2e-05 0.0013 22.0 0.3 10 42 253 286 252 287 0.88

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	3	0.29	30	8.0	0.2	25	42	28	46	27	47	0.80
2	3	1.2e-05	0.0013	22.0	0.3	10	42	133	166	132	167	0.88
3	3	1.2e-05	0.0013	22.0	0.3	10	42	253	286	252	287	0.88

Coding Sequence: ATGTCCAGAAATAGAACAAAGCCTCTCGGTACAAGAAACTATGCAAACTACAGTCCACAAATATTAGAGGAGCCTGAAACAAGATATGGCATCTCTAGATCAACCATTAAGAACAAACTGAAAGTCAGACACACTAGTAAAGTTGGACGTGCCAAAACCTTCAGTGAAGATGAGGAGTTAGCTTTCAAGCAGCATCTGATAAATATGTCTGATTATAGATTTCCAGTTGTTGAGACTGATTTTAGATACGCAGTGAAAGCTTATTTAGATAAGAAAGGTGTCAAAATTGATGCATTTTGCCAAAATCTTCCTGGATATGAGTGGACAAAGTCTTTTTTAAGAAGGCATTCGCAATTAACAACTCGCTTAAGctcaaacataaaaaaagttaGAGCTCAGGCCATTAGGTCAGGTGAACTGACGCAACGATCAGCTGAAACAAGATATGGCATCTCTAGATCAACCATTAAGAACAAACTGAAAGTCAGACACACTAGTAAAGTTGGACGTGCCAAAACCTTCAGTGAAGATGAGGAGTTAGCTTTCAAGCAGCATCTGATAAATATGTCTGATTATAGATTTCCAGTTGTTGAGACTGATTTTAGATACGCAGTGAAAGCTTATTTAGATAAGAAAGGTGTCAAAATTGATGCATTTTGCCAAAATCTTCCTGGATATGAGTGGACAAAGTCTTTTTTAAGAAGGCATTCGCAATTAACAACTCGCTTAAGctcaaacataaaaaaagttaGAGCTCAGGCCATTAGGTCAGGTGAACTGACGCAACGATCAGCTGAAACAAGATATGGCATCTCTAGATCAACCATTAAGAACAAACTGAAAGTCAGACACACTAGTAAAGTTGGACGTGCCAAAACCTTCAGTGAAGATGAGGAGTTAGCTTTCAAGCAGCATCTGATAAATATGTCTGATTATAGATTTCCAGTTGTTGAGACTGATTTTAGATACGCAGTGAAAGCTTATTTAGATAAGAAAGGTGTCAAAATTGATGCATTTTGCCAAAATCTTCCTGGATATGAGTGGACAAAGTCTTTTTAA
Protein Sequence: MSRNRTKPLGTRNYANYSPQILEEPETRYGISRSTIKNKLKVRHTSKVGRAKTFSEDEELAFKQHLINMSDYRFPVVETDFRYAVKAYLDKKGVKIDAFCQNLPGYEWTKSFLRRHSQLTTRLSSNIKKVRAQAIRSGELTQRSAETRYGISRSTIKNKLKVRHTSKVGRAKTFSEDEELAFKQHLINMSDYRFPVVETDFRYAVKAYLDKKGVKIDAFCQNLPGYEWTKSFLRRHSQLTTRLSSNIKKVRAQAIRSGELTQRSAETRYGISRSTIKNKLKVRHTSKVGRAKTFSEDEELAFKQHLINMSDYRFPVVETDFRYAVKAYLDKKGVKIDAFCQNLPGYEWTKSF

Sequence clustering based on sequence similarity using MMseqs2